BAC Information

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BAC

Clone NameMSMg01-467F16
Chromosome11 (Build37)
Map Location 116,969,792 - 116,970,207
singlet/doubletsinglet
Overlap geneLOC100042036
Upstream geneTrim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
Downstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467F16.T7 (MSMg01no467_f16.b1)MSMg01-467F16.TJ (MSMg01no467_f16.g1)
ACCAG551084AG551085
length745740
length of high quality
(start - end)		238 (71 - 308)416 (71 - 486)
definitionCHROMAT_FILE: MSMg01no467_f16.b1 PHD_FILE: MSMg01no467_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:11 2005CHROMAT_FILE: MSMg01no467_f16.g1 PHD_FILE: MSMg01no467_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCGCGGAATTCCAT
GAGTTTTCCAATTTGGGAAACAAAACCAAAGAGGGCTTTGGANAGAGAGC
CACCATTCCGCCAACTTTCCCGGGCTTGGTCAAGAGAAACTGCATGAATT
CTCAATTCATTTTAGGGAGTGAATTTTCTGTCTGTGACCCCAGCACTCAA
GAGGCCGAGGCAGGAGGACTGCAGTGAGGCTGAGCCATACAGGTAGAGAA
CTCATCTCAACCATGCTATACCCCTTTTAAAAAGATGAACTTGCCTAAAG
TTTCCAGCTCTTTTTCAGCACCCACCAAGTCCAGGCTGCCCAGTGTCCTT
CCTCCAGCCACTGCTCACAGCACAAGGGACAGACCACAAGCAACACTGTC
ATGGGGGCCTGACCCCAGAAGAGAGCACCTAGGCCAGTCTGGCAGAGAGG
TACAACTCTGTCCTGGGTTTAGGTGTCGACATAGACCCTCTGAGTGGCAG
GTTAGCCTCCCTGAGAGACAAAAGTGGCTGCCCACAGGAACAACAGTCAA
GGCTCTGGCATGGTCTCTTCTGATATTGGACGCAGAGAGACAAATGTAGA
CCTCAGCTCTGACCTTTTGTCACCAAGATGTTCTGGTCTTGTTCTCTTTG
GAAGTTGACACCTTTAGGCCACATGCCCACCTCTTCGTAAAACTCCCTGT
TTCTCTTTTTCCCCGCTCTGTCCCCTGTTTGCTTCCCTTACTTTG

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATAGAGGGCAGCTTTGAAGTGTGAACTGCT
TTGAAGTGTGAACTGCTTTCCCTAGTCAACATCGCTTTGAGCAAGAGAGT
GAGTTCATTTGTACCTTTGGAAAAGACTACTGCTTGCAATACCTTGGGGG
AGCACGGCTTAGGTGGGGGAAAAACTGGATACAAAGGCTTTGCCTCTTTC
GACCATAATGAAATATTTTTAAAACTCGGTGAAGCTGGACGACGCCTTCT
GCAGAGCTGGCTTCTTGTTCCCACATTTTTGCAGCTTGGGGATGATGCAA
TGCATTAGCTCAAGGCTGCTGGGCAGCTGCCAGGGCTCAATTAGGAAATT
GTGCCTGCAGGATAACCTACATTCACAGTATTTTTCCAGGCTGGAAACTT
TGCCAGGTGGCCCATGTCGGGAGACTCTGTCATGCCTTGCAAGGCTGCTT
TTAACTCCTTTTCCACCAGGTGGGCACAGGAACTCTCTCTCCCAAAAGTG
TGTCTCCGATCCCCCCCATGCTCCCATAATGCCCGTCCCCCGCTTAATGC
CTCCGAGGGTGTACACTACCCCAGACCCCCCTAGTCTTACAGTTTACGCA
AACTCGGCCCCCTCATCTTTTCCGGCATTATCTGCCCTTCCCTTTCCTTT
ACCCCTTTCACTCCTTGCCCCCTAACCTATCATATACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_f16.g1 MSMg01no467_f16.g1 CHROMAT_FILE:
MSMg01no467_f16.g1 PHD_FILE: MSMg01no467_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:11 2005
         (416 letters)



>mm_chr11_116969592_116970407
          Length = 816

 Score =  774 bits (400), Expect = 0.0
 Identities = 412/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagagggcagctttgaagtgtgaactgctttgaagtgtgaactgctttccctagtcaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atagagggcagctttgaagtgtgaactgctttgaagtgtgaactgctttccctagtcaac 260

                                                                       
Query: 61  atcgctttgagcaagagagtgagttcatttgtacctttggaaaagactactgcttgcaat 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcactttgagcaagagagtgagttcatttgtacctttggaaaagactactgcttgcaat 320

                                                                       
Query: 121 accttgggggagcacggcttaggtgggggaaaaactggatacaaaggctttgcctctttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 accttgggggagcacggcttaggtgggggaaaaactggatacaaaggctttgcctctttc 380

                                                                       
Query: 181 gaccataatgaaatatttttaaaactcggtgaagctggacgacgccttctgcagagctgg 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaccgtaatgaaatatttttaaaactcggtgaagctggacgacgccttctgcagagctgg 440

                                                                       
Query: 241 cttcttgttcccacatttttgcagcttggggatgatgcaatgcattagctcaaggctgct 300
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttcttggccccacatttttgcagcttggggatgatgcaatgcattagctcaaggctgct 500

                                                                       
Query: 301 gggcagctgccagggctcaattaggaaattgtgcctgcaggataacctacattcacagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcagctgccagggctcaattaggaaattgtgcctgcaggataacctacattcacagta 560

                                                                   
Query: 361 tttttccaggctggaaactttgccaggtggcccatgtcgggagactctgtcatgcc 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttccaggctggaaactttgccaggtggcccatgtcgggagactctgtcatgcc 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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