Query= MSMg01no467_j18.b1 MSMg01no467_j18.b1 CHROMAT_FILE:
MSMg01no467_j18.b1 PHD_FILE: MSMg01no467_j18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:32 2005
(481 letters)
>mm_chr11_47868467_47869347
Length = 881
Score = 886 bits (458), Expect = 0.0
Identities = 477/484 (98%), Gaps = 3/484 (0%)
Strand = Plus / Plus
Query: 1 ttgcatagtacactggagaccagcttgatataatcaagaccacatccccaaacaaaacaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcatagtacactggagaccagcttgatataatcaagaccacatccccaaacaaaacaa 260
Query: 61 aacaaaatgaaatgaaattaagagccagaattctgatgtttgaaatcttgctttttatgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaatgaaatgaaattaagagccagaattctgatgtttgaaatcttgctttttatgg 320
Query: 121 ttgtgagatagcatcagagaaatacaaagactccacacataacacacacagacacagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgagatagcatcagagaaatacaaagactccacacataacacacacagacacagaca 380
Query: 181 cacacacactcactgctaatggaaattcatattagcatttagaaaccacccctctcagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacacacactcactgctaatggaaattcatattagcatttagaaaccacccctctcagaa 440
Query: 241 atatttctctcacgagagaaatatatatatatat--tgacccttcttcctcaacaataga 298
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 atatttatctcacgagagaaatatatatatatatattgacccttcttcctcaacaataga 500
Query: 299 ttctatgtagccccca-tcagctaccttaaatatcacggaacagtggctctctgatgaag 357
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctatgtggcccccaatcagctaccttaaatatcacggaacagtggctctctgatgaag 560
Query: 358 atttaatgatccatgtgtacctgctgggtcctggattgaaatttcaaaataaaatatcag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 atttaatgatccatgtgtacctgctgggtcctggattgaaatttcaaaataaagtatcag 620
Query: 418 agcttcctatatattgtattactgcttctcaaaaatgccttgatatgactatgactattt 477
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 621 agcttcctatatattgtattactgcttctcaaaaatgccttgatatgactctgactattt 680
Query: 478 caat 481
||||
Sbjct: 681 caat 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no467_j18.g1 MSMg01no467_j18.g1 CHROMAT_FILE:
MSMg01no467_j18.g1 PHD_FILE: MSMg01no467_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:32 2005
(437 letters)
>mm_chr11_48029116_48029952
Length = 837
Score = 516 bits (267), Expect = e-151
Identities = 296/315 (93%), Gaps = 15/315 (4%)
Strand = Plus / Minus
Query: 123 ttttcttcttaaatgtggacagtcagtcataggacaaattccactaacaacaacaacaac 182
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 ttttcttcttaaatgtggacagtcagtcataggacaaattccact--------------- 793
Query: 183 aacaacaacaacaacaacaacaacaaaaatacaagatggcctctgaaactaggtgataaa 242
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 792 aacaacaacaacaacaacaacaacaaaaatacaagatggcctctgaatctaggtgataaa 733
Query: 243 agatgtggaagatggggaggtggctcagttggtaaaatgctggccattcataaggacttg 302
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 732 agatgtggaagatggggaggtggctcagttggtaaattgctggccattcacaaggacttg 673
Query: 303 attttggattcctagtacccatatgaaagcaaggcttttcaacagataattcagttaacc 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 672 attttggattcctagtacccatatgaaagcaaggcttttcaacagataattcagctaacc 613
Query: 363 ttacttattcatgatttctccacgaagatttccaggcactgaaggacagaggcaaacttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 ttacttattcatgatttctccacgaagatttccaggcactgaaggacagaggcaaacttt 553
Query: 423 ccctattgctccatg 437
|||||||||||||||
Sbjct: 552 ccctattgctccatg 538
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space: 354384
Effective search space used: 354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
