BAC Information

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BAC

Clone NameMSMg01-467N12
Chromosome11 (Build37)
Map Location 4,088,380 - 4,088,620
singlet/doubletsinglet
Overlap geneTbc1d10a
Upstream geneSfi1, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
Downstream gene2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467N12.T7 (MSMg01no467_n12.b1)MSMg01-467N12.TJ (MSMg01no467_n12.g1)
ACCAG551455AG551456
length753779
length of high quality
(start - end)
229 (83 - 311)238 (73 - 310)
definitionCHROMAT_FILE: MSMg01no467_n12.b1 PHD_FILE: MSMg01no467_n12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:50 2005CHROMAT_FILE: MSMg01no467_n12.g1 PHD_FILE: MSMg01no467_n12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXAATACTGACAACCCGCGGA
ANTCCATCATTTGCAAAAAGAGCATTTTAAAATATGAGCCTATGGGGCAT
TCTCATTCAAACCATTCACAACCCACATCTTGACCTCTTGCGCGCACTCG
ACTCGACCAGCAAGAACGACGCTGCAACAGGATCCTTCTGCACATGTTTA
TTGGGAGAGCTTGATTGCAGAGGCGAAAAGACTTCGAGCCCAGAACTTTT
GCTGCTTTTATAGGCCTAGGAGAGGCGTGTCTCATACCCGGATTGGTTAT
GCACTAAGCCTTTTGTTCATGTTCCTCATCTGATTGGNTACTCTCTCTCA
GTACCTCTCAGAGCCTCATTATCATATCTCATTTGCATGTCTCACATCCG
ATTGGCTACTCTCTTACCACCTTACAGAACCTCATTATCATGCCTGGTCC
AGCCAGTGTTTTTGCAAAATACTTTCCTGCATATGTACACATTGGTCTGT
TTGACCAATCTTACGCTCGCTGGCCAGCATCATCCCGCGTCCCTCCCCTA
CCCTACTTTTTTTTTTCTTACATCCGACTTTTCCCAATTCATCTTTTCCC
CCCCACAATGTTTTCCCCTCCCCTTATTCTATAACTCCCCCACTTTTCTT
TTTTTTATCCCCCACACACTTGTATCAACAAGCTCTACACGTACAATATG
TTCTTTCTTTGTATCCCCCCCGCTTTACCTCTTTTTACACTCCACACCCA
TCA
CATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTCCCACCCCCTCAAGACCTCACCCT
TCCTGGGCCCCTGATCCCTGAGGAAGGGCCCAGGAAGGGTCCCTGATGAT
CTTGCCCCAACTGAAACACAGCCTAAACCCTCTCTCTAGGTTCCCACAAG
CTCATACAGGGTGAAAGGTGAGAATGAGGGCTTCTGGTTCTGAACTGGAC
CAGGCTTAGTCTAATGTGAGCAAGAAAGAAAGGTTGGAAGAGACAGATCC
AGTGGGTGGGAGTTTTATTAGGTCAGAGGCCTGGATTTAAAATTTTCTCC
TTCTAAGGAGGAGGAGGCCTCGTGAATAAGAGACTCTTGGGGAGGGAGGG
TGATATGGTGCCCCCCCCCCTCTTCTTCTCCTCTCTTTCTTTCTTTCCCC
CTCTTCCCCCTTCCTCCTCCGTCTCTTTCCCTTTTCTTCCTTTCCTTTTT
CTCCTTTTCTTCTTCCCTTTTTCCCCCTCTTCCTCCCTCCTTTTTTTGCC
TGTCTTGTCTTCCCTTTTCTCCCCCTTAATTCCTCTTATTTCCCTTCCTG
CATCTTTTTACTCTTATCTCCCATCCCCCCCCCTTATCCTTACCCTATCT
TTTTATTTTTTTTCTTTCTCCCTACTATTTTTTCTCCCCCTTATTTCTCC
CCACCCCCCTCTATTTCTCTTTTTCTTCTATCTCTTTTCACTATATCTCG
TTTATACACTCATCCTATTTCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_n12.g1 MSMg01no467_n12.g1 CHROMAT_FILE:
MSMg01no467_n12.g1 PHD_FILE: MSMg01no467_n12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:50 2005
         (238 letters)



>mm_chr11_4088180_4088820
          Length = 641

 Score =  451 bits (233), Expect = e-131
 Identities = 238/241 (98%), Gaps = 3/241 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttcccaccccctcaagacctcacccttcctgggcccctgatccctgaggaagggccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttcccaccccctcaagacctcacccttcctgggcccctgatccctgaggaagggccca 382

                                                                       
Query: 61  ggaagggtccctgatgatcttgccccaactgaaacacagcctaaaccctctctctaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaagggtccctgatgatcttgccccaactgaaacacagcctaaaccctctctctaggtt 322

                                                                       
Query: 121 cccacaagctcatacagggtgaaaggtgagaatgagggctt---ctggttctgaactgga 177
           |||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||
Sbjct: 321 cccacaagctcatacagggtgaaaggtgagaatgagggcttctcctggttctgaactgga 262

                                                                       
Query: 178 ccaggcttagtctaatgtgagcaagaaagaaaggttggaagagacagatccagtgggtgg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggcttagtctaatgtgagcaagaaagaaaggttggaagagacagatccagtgggtgg 202

            
Query: 238 g 238
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 238
Length of database: 641
Length adjustment: 9
Effective length of query: 229
Effective length of database: 632
Effective search space:   144728
Effective search space used:   144728
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)