BAC Information

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BAC

Clone NameMSMg01-468M08
Chromosome11 (Build37)
Map Location 68,862,213 - 68,862,544
singlet/doubletsinglet
Overlap geneAurkb
Upstream geneStx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik
Downstream gene2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468M08.T7 (MSMg01no468_m08.b1)MSMg01-468M08.TJ (MSMg01no468_m08.g1)
ACCAG552165AG552166
length848806
length of high quality
(start - end)		85 (119 - 203)332 (74 - 405)
definitionCHROMAT_FILE: MSMg01no468_m08.b1 PHD_FILE: MSMg01no468_m08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:07 2005CHROMAT_FILE: MSMg01no468_m08.g1 PHD_FILE: MSMg01no468_m08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAACCGCGGAA
TTCATTCTAAGTTCCCCCGGAGCTGGTATGTGAAGATTGTATGTTTAATG
GTGTTTTCTGCAGTGCATCTTACTTTTATAGACTCACACTGAAAGCCTAT
CACTACCCACAAAACAGTTTACTTTACCAAGCCATGCATGCTACATCCAC
ACATGCGATATGGTACAGCAGTCGAGGACAGGGCGCATATTTGTGAATCA
GCATACTATGACTCAAAAGTACATTAAATGCTAAGAAGTTACAGGACGGT
AAGTACAATTCAACATTAAAAAATTTATTGAAATTGTGTATGTCAGCTTG
GACGTGATGCCTCATGACTGTAATCCCTCACATCGCATGTCTGTCCACAT
TACTATCCACGATTTCCCCATCAATTACCCTTCCTCCTGTCTCACAATTC
ATCGCACTTATCATCCTCTTAATACTTTCATTGTCTCTCGATCTTATACC
TCCCTTCAATCCTATGTTTCCTCCTCCTCCTTTTCTTTATATTCAACTAT
TTTACCTTTCCCTCTCAATTCCGTAATCCAACAATCCCTATTATATCCTT
CCTTCTCTCCTTATTTCAAATATATCAACAATTATAATACCTCCGTCATA
TAATAAATACATCCTCCCTTACATCCTATGTATCCTTATATTATAATACC
ACCATTTCCACTTACCTCGCATCTCCCTTTTCTTTCCATTCTTTTTTTAT
TTTTCCTACCTTCTCTTTTTTATTTCCCTTTCTTTTTTATAACCTCACTT
ATTTTTTATTTTCATCCATATTATTTACCACACACCACACCTCTATTA

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGAGTCGCCTATTTCTGTAAAGTAAT
CACTATGTCTATACTGCAAGGAGAAAAAAACAAAACAAAACAAAACCCAA
ATGTTCCTGAGGAACAAGACACTGAAGACTTTTATAAAGAACGTCACAGC
CTCACATCAGGAACAGCCCCCCAAGTCCCTCCATACCTCAGGGATGGGGC
ATGCACCGACCAGCCAAAGTCTGCAATCTTCAGTTCTCCCTGCAGACCTA
ACAGCAGGTTCTCCGGCTTTATGTCTCTGTGAATTACCTTCTTCTTGTGG
CAGTAGGTCAGGGCATCTGACAGTTCCTCCATGATCTGTGAGGGTCCACA
CAAGAGGCAATTAGGCCCCCTGTTTCCAGCAATGGCCCAGGCCCTAGATC
CCACACCAGGTATGCCCTGACCGTGTCAGTCCTCTGCTCCCTCAAAGTTC
CCGATTCTTCGGAGCTCTCTTGCAAAATTTCCCCTGCGCTTCTTTATACC
CCCATTCTCTACATTCTTCGGTCGTATCTCAAATACCCCCTCCTTCTTAT
CTCATCTTCGTTCTTGCTTCTCTCTTCTCTCTCTTCCTATATACATCATT
ACTCTTACTTTATTTTCTTCTTCCTTATCATTTTCTTATTTTTATTTTCC
TCTAACTATCTTATTTTTTTCTTTTTTTTTTTTCTCTTTCCTTATCTTTC
AATAATTAATTTTTTTACCTTTTTTTTTTTTTCCTCTCTTCTTTTTTCTC
CCCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_m08.g1 MSMg01no468_m08.g1 CHROMAT_FILE:
MSMg01no468_m08.g1 PHD_FILE: MSMg01no468_m08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:07 2005
         (332 letters)



>mm_chr11_68861940_68862671
          Length = 732

 Score =  642 bits (332), Expect = 0.0
 Identities = 332/332 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagtcgcctatttctgtaaagtaatcactatgtctatactgcaaggagaaaaaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 ttgagtcgcctatttctgtaaagtaatcactatgtctatactgcaaggagaaaaaaacaa 546

                                                                       
Query: 61  aacaaaacaaaacccaaatgttcctgaggaacaagacactgaagacttttataaagaacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aacaaaacaaaacccaaatgttcctgaggaacaagacactgaagacttttataaagaacg 486

                                                                       
Query: 121 tcacagcctcacatcaggaacagccccccaagtccctccatacctcagggatggggcatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tcacagcctcacatcaggaacagccccccaagtccctccatacctcagggatggggcatg 426

                                                                       
Query: 181 caccgaccagccaaagtctgcaatcttcagttctccctgcagacctaacagcaggttctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 caccgaccagccaaagtctgcaatcttcagttctccctgcagacctaacagcaggttctc 366

                                                                       
Query: 241 cggctttatgtctctgtgaattaccttcttcttgtggcagtaggtcagggcatctgacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cggctttatgtctctgtgaattaccttcttcttgtggcagtaggtcagggcatctgacag 306

                                           
Query: 301 ttcctccatgatctgtgagggtccacacaaga 332
           ||||||||||||||||||||||||||||||||
Sbjct: 305 ttcctccatgatctgtgagggtccacacaaga 274


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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