BAC Information

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BAC

Clone NameMSMg01-468P04
Chromosome11 (Build37)
Map Location 120,292,508 - 120,293,056
singlet/doubletsinglet
Overlap geneNploc4
Upstream geneLOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik
Downstream geneTspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468P04.T7 (MSMg01no468_p04.b1)MSMg01-468P04.TJ (MSMg01no468_p04.g1)
ACCAG552300AG552301
length790776
length of high quality
(start - end)
174 (74 - 247)549 (73 - 621)
definitionCHROMAT_FILE: MSMg01no468_p04.b1 PHD_FILE: MSMg01no468_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:21 2005CHROMAT_FILE: MSMg01no468_p04.g1 PHD_FILE: MSMg01no468_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGA
ATTCCTTACTTCTTGACACGGCTAAGATGCTTCAGACCCACCTTCTATTT
CCCTGCCCAACCTGGAGCCACCATTTCTCCAAGGAACCCTGGCTCCTTTA
GTGGAGACTAACAACATCTAGGAAGCAGCATCCGATCAGTGGGTGAGCTT
GTCAATTCTGGTCTTGTCCAGCCAGAGCTGGGACACCTGGATACTAACTA
ATGTGTGTACTACTGTGTCTATTCTGTAGGGTCTAGCCATATCTAGACAT
TTGAGCGACTGAGCTCCTACTGTTATCTCTGACTCTCACACCCCAGGTTC
CCTTGCTTCCTGTTGTTATAAATTCTCGGCGCAGAAGGTTGCCTCGGACC
CGCATTACTCACTTAGATGATTCAGCATGTAGTGTGGATCCGAGCTTTCA
GAGCTGCTTTCTAGTTTCCGTAAGCAACATCTGCTAACCAGACTACCGCG
TGTCCTAAGTTTTGACTTTTAGTGTATTAAGATGCAGTACAAATATTCAT
TTCCAGAGTCGCTCGGTTACTGATCGTATTGTCACCCACTTTTAATCCCA
ATACTCTATAGGCATAGTCTGGAGTGATTTCTGAGCTTTGATGACTGTCT
CGTTAACATATCTAAGTTACCATGCACTACCTATATCTCTGTCTTTTAAA
AATAAAATTTAGCTCTTTCTGTGGGCGCGTCCTGTGCCGTCCTACAATCC
CCAGCTACTTCCCACCATTTTATAATCCACTCTCTTTACC
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAAAACACAGGACAGCCAGGGCTACATAGAGAAACCC
TGTCTCAAAAAACAAAACAACAACAAAAAAAAGAATCAGGGAAGGAAGGG
GTGGCCTGAAGAGATGGCTCAGGGGCTAAGAGCAAAGGCTGCTCTTCTAA
AAGACCCAGGTTCCATTCCAAACTTATGTAGCAGCTCACAACCACCTGTA
ACCCAGTTCCAAGGGGGATCTGACAACTATTCTGGCCTCCACGGGTACTA
GACATACATATGTGGTACACATATTCTCATCCGCATACCTAAAAATAACA
AAATTGCCAGAATCTCCCATTGTTCTATTTAATAAACAAGCATGCAGGCA
AATGTCTACAGACCTGGCAACACATGCAAGCAAAACATCCATATACCTAA
AAAAAAAAAATCGGGAGAGGGGCATGGCTGGAGAGATGGGTCAGCTGTTT
AAAACATTTAAAACATTGCAGAAGACCTGGAATCAGTTACCAACACCACC
TGAAACTCCAGTTCAGAAGAATCCAACACCCTCTTTTGGGCATCATGGAC
ATTGCACATATGTAGTATACAAACATACCTGCCAGCAAAATACTCATATA
CCTAAGATAAAAAATAAATCAATCATAAAAGCCAGGCGTGGTGGATATGC
CCTTAATCCCAGCAGAAGCAGGCAGATTTCTGTGAGTTTGAAGGCAGTCC
TGTCTACCAGTGAATTCCAGAAAAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_p04.g1 MSMg01no468_p04.g1 CHROMAT_FILE:
MSMg01no468_p04.g1 PHD_FILE: MSMg01no468_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:21 2005
         (549 letters)



>mm_chr11_120292308_120293256
          Length = 949

 Score = 1038 bits (537), Expect = 0.0
 Identities = 546/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggacagccagggctacatagagaaaccctgtctcaaaaaacaaaacaacaacaaaaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggacagccagggctacatagagaaaccctgtctcaaaaaacaaaacaacaacaaaaaaaa 260

                                                                       
Query: 61  gaatcagggaaggaaggggtggcctgaagagatggctcaggggctaagagcaaaggctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatcagggaaggaaggggtggcctgaagagatggctcaggggctaagagcaaaggctgc 320

                                                                       
Query: 121 tcttctaaaagacccaggttccattccaaacttatgtagcagctcacaaccacctgtaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttctaaaagacccaggttccattccaaacttatgtagcagctcacaaccacctgtaac 380

                                                                       
Query: 181 ccagttccaagggggatctgacaactattctggcctccacgggtactagacatacatatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagttccaagggggatctgacaactattctggcctccacgggtactagacatacatatg 440

                                                                       
Query: 241 tggtacacatattctcatccgcatacctaaaaataacaaaattgccagaatctcccattg 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtacacatatcctcatccgcatacctaaaaataacaaaattgccagaatctcccattg 500

                                                                       
Query: 301 ttctatttaataaacaagcatgcaggcaaatgtctacagacctggcaacacatgcaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctatttaataaacaagcatgcaggcaaatgtctacagacctggcaacacatgcaagca 560

                                                                       
Query: 361 aaacatccatatacctaaaaaaaaaaaatcgggagaggggcatggctggagagatgggtc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaacatccatatacctaaaaaaaaaaaatcgggagaggggcatggctggagagatgggtc 620

                                                                       
Query: 421 agctgtttaaaacatttaaaacattgcagaagacctggaatcagttaccaacaccacctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agctgtttaaaacatttaaaacattgcagaagacctggaatcagttaccaacaccacctg 680

                                                                       
Query: 481 aaactccagttcagaagaatccaacaccctcttttgggcatcatggacattgcacatatg 540
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct: 681 aaactccagttcagaagaatccaacaccctcttttggtcatcatggacattgcacaaatg 740

                    
Query: 541 tagtataca 549
           |||||||||
Sbjct: 741 tagtataca 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)