BAC Information

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BAC

Clone NameMSMg01-469D16
Chromosome11 (Build37)
Map Location 121,401,647 - 121,402,143
singlet/doubletsinglet
Overlap geneTbcd
Upstream geneBC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Zfp750
Downstream geneB3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469D16.T7 (MSMg01no469_d16.b1)MSMg01-469D16.TJ (MSMg01no469_d16.g1)
ACCAG552514AG552515
length7431,033
length of high quality
(start - end)
497 (80 - 576)---
definitionCHROMAT_FILE: MSMg01no469_d16.b1 PHD_FILE: MSMg01no469_d16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:44 2005CHROMAT_FILE: MSMg01no469_d16.g1 PHD_FILE: MSMg01no469_d16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTCATAATTTTGCGGCGGTAATAGGAATCACTTTCAAAATAGGATCC
GCGGAANTCATATTTTCCTATCTCTTGGNTACTATAGACACTTTCTATGG
TCAAACAAGCAGACAGTCCTGTACATACAAGGCAACCTAGGACTGGCTTT
CCAGACACATGGGTGTCTGTGGAGGTTCCCTCTCTGGTCTAGGTCTGGTG
CCTTCTTCTCTCTCTGAGGTTGTTGAAGTCTGTGATAAGAAGATTTGGAT
GGTGTCCTATGGTTTCACATCCATTCGCCTCACTTGTGAGTGTCACCAGT
GCTCCCCATAAACACACGTTTTTTCCTATCCTGCTGTCGGCTTCTAAGTT
TTGTACTCTGTTGGTGTGGCCACAGATTTGGCAGCCTAGCTATGGTTATT
GTTCTGAAGAACTGTCATTTCTTTATGTGATTCTTGGGAAACCCAAATTT
CCTTTGTACCTTTGAGCTGATGGGCTTGCTTCCCTTTCAGGGTTTTTTGT
TTGCTTTGTTTTGTTTTTCCTGAGCAGGCTTTGACTCCTGTCTGTGATTC
TGCCTCATGGTTTGCCATCAACTGCTCTTTGTTTTTGTCTCCTGCCAGTT
GTCACGGTGATCCTGAAGGCCCTTACCCACGATGACAATTGTGCTGTCTG
CCATGTCTGGGCCAATGTTAGGGATGCTGCCTGGTATGCGTGTTGGGCTT
TTGCCCTATGCCATGATTCCCACCAATTTACATCTTTTTTGTG
CGTTTCCCGCCTGCTGTTCTCTGAAGACTAACTACCTTTTAAACAGTGTT
ACCGTATCTTACCACCTTTCTTACGCCCAGCAGCCGACGGAGCGGTACGG
ACTATATATCCCATCCCGTCGTTTCGCTGCAACGCTCCGTATTCGTCGCT
AGATTTCGCTTCTGCTTTTGGCTGGCGTGCGGTCCTGTTTTTCGTCCGCG
TGCGGTTGTTTTTTTTATGTTTTCTGCTGCGCCGGCTTTGCCTTTACACA
GCTAATTTGTTCTTGCGCGTCGGATTTCGTTGATACGCGTCGACAGGATG
GTGTATTACGATAATAGGTATAGGTATACAGAATACATATATACGGCCCT
ACCACTTTTCGCCGTGCTGTCGTCTCCTTTCACGTTTGGTAGCATGTTCT
TAATGATTGTTAGCTCGCACCATGGCCTATCCTGCCCTCTATCCGTAAGC
ATAGTCGCTCCACCATTTATCCTAGTCGAGTCCGCATTTATACCGTAAAT
CCTCGATGAACGTTAGATTACGCGGGGACATTTGCTGTTTAGCGCTGAAT
ATCTGTGATGTGATTAGCATATAAATGCGTTAATGTACGATGTGGACTAG
GCAGCACTGATAGGTGTATTCAGATAATCGTCGTCACGTATACCTATCTT
TCTTATACGACGATATTTTGTACGAATTGATTCGCGAGAATGCAAGAGCG
CACTTAAAGTCGCGGCGTATTTATATGTTTGATCCAGTCACCGGCGAGCT
ATATTACACTTTATATACATCGCCTCTGTACTTGTACAAGTACGGAATAG
GTCGTGCCCGCTGTTTGTATTGAATGGTGGACCCGCCCTATCGCTTGCCG
CCTATTTATGTTGCCACGACATTATATGCGTATAACTTCTACATGTTACG
TATAAGTGCGTATAGTTTATTATCAGCCGTCGGCGTTGGTGTGGAACGTG
TTCGCAGTCGGTGGCGTGTCAGGGTCTACATTTGGCCGCGTAGTGGATGG
GTGCCGTGTGTTCTATCCACCTGCTACCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_d16.b1 MSMg01no469_d16.b1 CHROMAT_FILE:
MSMg01no469_d16.b1 PHD_FILE: MSMg01no469_d16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:44 2005
         (497 letters)



>mm_chr11_121401447_121402343
          Length = 897

 Score =  899 bits (465), Expect = 0.0
 Identities = 489/501 (97%), Gaps = 8/501 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactatagacactttctatggtcaaacaagcagacagtcctgtacatacaaggcaaccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactatagacactttctatggtcaaacaagcagacagtcctgtacatacaaggcaaccta 260

                                                                       
Query: 61  ggactggctttccagacacatgggtgtctgtggaggttccctctctggtctaggtctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactggctttccagacacatgggtgtctgtggaggttccctctctggtctaggtctggt 320

                                                                       
Query: 121 gccttcttctctctctgaggttgttgaagtctgtgataagaagatttggatggtgtccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gccttcttctctctctgaggttgttgaagtctgtgataagaagatttggatggtgtccta 380

                                                                       
Query: 181 tggtttcacatccattcgcctcacttgtgagtgtcaccagtgctccccataaacacacg- 239
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| 
Sbjct: 381 tggtttcacatccattcgcctcacttgtgggtgtcaccagtgctccccataaacacacgg 440

                                                                       
Query: 240 ---ttttttcctatcctgctgtcggcttctaagttttgtactctgttggtgtggccacag 296
                  ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccc----ttcctatcctgctgtgggcttctaagttttgtactctgttggtgtggccacag 496

                                                                       
Query: 297 atttggcagcctagctatggttattgttctgaagaactgtcatttctttatgtgattctt 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 atttggcagcctagctatggttattgttctgaagaactgtcatttctttatgtgattctt 556

                                                                       
Query: 357 gggaaacccaaatttcctttgtacctttgagctgatgggcttgcttccctttcagggttt 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 gggaaacccaaatttcctttgtacctttgagctgatgggcttgcttccctttcagggttt 616

                                                                       
Query: 417 tttgtttgctttgttttgtttttcctgagcaggctttgactcctgtctgtgattctgcct 476
           |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 617 tttgtttgttttgttttgtttttcctgagcaggttttgactcctgtctgtgattctgcct 676

                                
Query: 477 catggtttgccatcaactgct 497
           |||||||||||||||||||||
Sbjct: 677 catggtttgccatcaactgct 697


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 897
Length adjustment: 10
Effective length of query: 487
Effective length of database: 887
Effective search space:   431969
Effective search space used:   431969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)