BAC Information

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BAC

Clone NameMSMg01-469I03
Chromosome11 (Build37)
Map Location 91,111,662 - 91,111,822
singlet/doubletsinglet
Overlap genenone
Upstream geneMmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469I03.T7 (MSMg01no469_i03.b1)MSMg01-469I03.TJ (MSMg01no469_i03.g1)
ACCAG552728AG552729
length798667
length of high quality
(start - end)
161 (80 - 240)38 (73 - 110)
definitionCHROMAT_FILE: MSMg01no469_i03.b1 PHD_FILE: MSMg01no469_i03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:07 2005CHROMAT_FILE: MSMg01no469_i03.g1 PHD_FILE: MSMg01no469_i03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGG
ATCCGCGGAATTCAATAGTTTACGAAGATCTGGGAATAATGTCATTATAT
AGTAGGTTTTTGTTAAATGATTTGATTTTTTTCACAGCCGTTGGTCAATA
TAATGGCTCTATACACATTTCATTGGTCTGGCCTAAGCTGTAATGTTTAG
TAGGTTAGATTTATTGAATGTATTTTCTATTTAGAATACTCTTCTGGAAC
TTAAAAGGTGGTGTTTTATTTGGAAGTTAGTAACTCCCGCCACAGGTTAA
AGATCAACTGGATCGCTTAGATCTGGTTCAAAATTATTGTATTTAACTGG
AAAAATCTGTAATATGAAAACCCGGGTGTAATTACTTTCCCCCCCCTTTC
ATTCCTTCCCTAAAACATTTGGGTTTTTCCCCCGCTTATTCCCCTTTCCC
TTTCATTTTATTTTNNTTATGCTTCTGTNTTTNTTCCCNATATAAAAAAT
CAACTGGTATTTTTTTTTCTTGCCTTCTTTCCTTACTATTTTTACTTTTT
NCCCNCCCNNNNNNNNNNNNNNNNNNNNNNTTTTNNTTAGGCTTCGNNTG
CAGTNNNNCNNNNCNNNNNNNGNGCTCTGGCCCNNNNNNNNNNCCCCGAA
AGCAGGACNNNCCCACCCTATCTTCTTATAATTATTTCNNCNCCTGATAC
GNCTTTATCCCTGCCCNNCCCCCCNNCCCCCTTTCTCTCCTCGATTACTC
CCCCCCCCCCCCCCCCCCTTTTTGGACACGAGTGATTTTCGCGTTCCG
NCCTGATGATAGGGGAGGCTGGGGGCGCCGTCCGCGACXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGGAAAAAATGTTTTCAAACTTATTCCCCCCTTTTTTAAAAAAA
ATTTCCCCCCCAAATTTTTCCCCCCCAATCAATTTTGGGGGTCNTCCNNN
NNAAAAAATTGGCCTAAAAAAATTCCCAANTAAAAAAAACCCTCTAAAAA
CCCCCCCCCCTGGGGGGGAAAAGGAAAAATTGTTCNNCGAAAACCCGTTT
TCTAAAAAAACCCCAAGGGGTTCCCGGGAAAAAGGGGGGGTTATAAAGAA
ACCTAAAAAAAATTTCGGGGGGAAACCAAAAAGGGGGGGCAAAAATGGGG
GAAAAAAAGGAAAAACTCCCCCCCCCTGGTGGGTGGGAGAAAAAAACACC
CTTGTGAAAAAGACCCCCCGGGGGGGGAGAAAAGGGCGGGGGGGGGGGGG
GGGCCCCCTTTTTTTTTTTTGGGGGGGGGGGGAGNCACCCCCCCGGGGGG
GGGGGGGGGGGGCCGGNAACATTTTTTTTCTTTTTGTGGGGGGGGGGGGT
TATTTCNTTCTACATTAAAAGGGGGGGGGGCCCCGNCCAAGGGGNAGNGG
GGGAGGTAGGGGCGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_i03.b1 MSMg01no469_i03.b1 CHROMAT_FILE:
MSMg01no469_i03.b1 PHD_FILE: MSMg01no469_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:07 2005
         (161 letters)



>mm_chr11_91111462_91112022
          Length = 561

 Score =  288 bits (149), Expect = 1e-82
 Identities = 158/161 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgggaataatgtcattatatagtaggtttttgttaaatgatttgatttttttcacagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 361 ctgggaataatgtcattatatagtaggtttttgttaaatgatttgatttttttcacagcg 302

                                                                       
Query: 61  gttggtcaatataatggctctatacacatttcattggtctggcctaagctgtaatgttta 120
           ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 301 gttggccaatataatggctctatacacatttcattgggctggcctaagctgtaatgttta 242

                                                    
Query: 121 gtaggttagatttattgaatgtattttctatttagaatact 161
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtaggttagatttattgaatgtattttctatttagaatact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space:    84609
Effective search space used:    84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)