BAC Information

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BAC

Clone NameMSMg01-471E14
Chromosome11 (Build37)
Map Location 117,985,394 - 117,986,008
singlet/doubletsinglet
Overlap geneDnahc17
Upstream geneSec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1
Downstream genePscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471E14.T7 (MSMg01no471_e14.b1)MSMg01-471E14.TJ (MSMg01no471_e14.g1)
ACCAG554089AG554090
length7621,701
length of high quality
(start - end)		612 (48 - 659)---
definitionCHROMAT_FILE: MSMg01no471_e14.b1 PHD_FILE: MSMg01no471_e14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:29 2005CHROMAT_FILE: MSMg01no471_e14.g1 PHD_FILE: MSMg01no471_e14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:48:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATTCGGGACAAGGCGAGGGATGAAGGGAATTCCCACGGCACGG
GCGGCCTGTCCTTTTAGAAGGGAGAGGAAGAGAGGAGGGTGAGTGGCTAG
AGGCGGCCACGGTTGCTGAGAGGCCCAGGCTCCACGAGCCCACAGGTACC
TTAAAGAAAAGCTTCATGTTGGCACAGCAGAAGTCGTAGGCTTGGAAGAG
CCCCTTGAGGACGCTCACCGACAGGGAGATGTTGCCCAGGACCTCCTCGA
TCTCCCCCTGCAGGCCCTTCAGCACCTCGTCCGGGCTCAGGTAGGTTCTA
GTCTACACAGAGGGAAAGACGGGCAACCTAAGACGTCCCTGACAGCGACA
TCTGGCGGCCATCCCTCCTGGAGTGATCTGGACACATGGAAGAAGGCCTG
TCCTCCCAAGACTCCTCTCCTGTTCAGGCTACAGCAGACTAGGGGTCATC
AGACATGGGAGACATATGGTGTTTTCTTGCTCCTATGGATAGGCTACAAG
CAGGATTTTTTTTTTTTTTAGATTTATTTATTATATGTAAGTACACTGTA
GTTGTTTTCAGACACACCAGAAGAGGGTGTCAGATCTCATTATGGATGGT
TGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAAA
GCAGTCAGTGCTCTTTAACACTGAGGCATCTCCCCAGCCCCTACNAGCAG
GATTTTAATATG

CGTCCGCTGTGCGTGGCGCGCNCNCGTGTGGTGATGCANGAAANCACATA
AAGACAGAGATGTCTCCCGCGCGCAGCACGCATGAGGACCGACACCACGC
CCNCGCCCAGTGCTGATCTTCTCCTNCAACAGCTAATATTTGTGCGGCGA
GTGTATATGTGTGACGGCTGTTTGAACTGGTATNCTACATCACCGCTCTN
GACACACAACCACCACATACACATTATCAACACAATAATCGAACATACAC
GCGATCATACCTCACATATTGCTCCGCGACAGTGACGCTGTCACGCGACC
ACAACCGCACAGATATACGACACACGTACTAGTCAGAACGCGAGATATGA
CGTTGGATCTAGAGACGACGCGNGTCGCGGCTTACTTCTACTCGCTAGCT
TCACCAGTACACATGACCGCAAGATGCCTATCCTCAACACATCTGNAANG
CCGCTATGATGCTCTGTTCCCATAATACTATTACGACTAAACGTACGTCA
CGCCTCGGATCGTACGTGTCATACACAGTTACTCTACGTCGCACCTTCAT
CGTGCTCAGCCATCTCGCGCAGCATAGTAGCTNATCATCATATACCTATA
ATGTCACGCACACNATACACCGCAGACGGCATCTAATCACCAGCGACGAG
ACCGCTATCATTGCGTATTATCTATTCGTGGCGATAATTAGCATACGCGC
GCGCCGCGTCTNCGACCGTGCTCGTCGTCACANTTCGCGCGTCGACTGGG
AGTTGTATTCGTGCTCGCGCGTCGCGTTCGGCGCGCGTTAAGCTACTGTG
ATACTCGTTNGATCTCTACATGAGCGCGAGAGAGATATATATNGATCNGT
ATCTGCATAACTACCGTAATTTTGCACACTTACATGATATGCACATAACA
CCTNGTTCNTTATTCTANCACGCTAATACGCNCGACGCGAAGAGAGAACA
TACTATGGACACTACACACGCATTAGCAGCGTAAGCACAGATTGAACTAG
TATCGAGTGTCGGATATGNTGNCGACGTGATATATATATATCTAACACGC
ACGCGNAGCGCGGAACCTCACCGTGACTTAGATCTCATACGACGCAGACN
ATGTAGTACATGTTCAATATAGACAATACGCCGACGGGATATAGATNGTA
TNATTCACCACTGACACGATACACCATAATAGATAGATACTAGTACTNGA
CAGCCGAGCCGGTCAGAGATGAGATAGNATCAACGAAGTAGCGCACAGTG
TATGCAGTCCGTCCGACATGCAGCATACACCACAGCGTNAAGATGTNGCC
GACAGNCACGTAGATCTCTCCGTCAAANTGGAGCGTGCCGACNTGCTGTG
AANTAGTACAGNGCAGCTATGACATGCANTAGCGTGACACGCATCCAGGC
AGCTAAGTNGNTCTNTGTACGGGATAACGAGTNCTTGCGACGGCGTGGAN
ATNTAATGACGCGACATAANAGATGACTGCNGTTTTGCATACAGATGAAT
CGATCAGNCGTAAACGTGTNGTATGANTAGCATCAACTNACTACGCGAGA
GCGGTNCTCATGAATGATAGCGCGAANCACTANTGTCGGCGACAGTTGTA
TGATCGACAACGCGNGTACAGCACACAACGCTACGAGGAGTCTCGTGTCT
ATATATGAGAACGACAGCACCACGATGCAACGGCNTATAGACTCCNCAAG
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_e14.b1 MSMg01no471_e14.b1 CHROMAT_FILE:
MSMg01no471_e14.b1 PHD_FILE: MSMg01no471_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:29 2005
         (612 letters)



>mm_chr11_117985199_117986210
          Length = 1012

 Score = 1131 bits (585), Expect = 0.0
 Identities = 605/617 (98%), Gaps = 10/617 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattcgggacaaggcgagggatgaagggaattcccacggcacgggcggcctgtc 63
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ggaattcattcgggagaaggcgagggatgaagggaattcccacggcacgggcggcctgtc 255

                                                                       
Query: 64  cttttagaagggagaggaagagaggagggtgagtggctagaggcggccacggttgctgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 cttttagaagggagaggaagagaggagggtgagtggctagaggcggccacggttgctgag 315

                                                                       
Query: 124 aggcccaggctccacgagcccacaggtaccttaaagaaaagcttcatgttggcacagcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 aggcccaggctccacgagcccacaggtaccttaaagaaaagcttcatgttggcacagcag 375

                                                                       
Query: 184 aagtcgtaggcttggaagagccccttgaggacgctcaccgacagggagatgttgcccagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagtcgtaggcttggaagagccccttgaggacgctcaccgacagggagatgttgcccagg 435

                                                                       
Query: 244 acctcctcgatctccccctgcaggcccttcagcacctcgtccgggctcaggtaggttcta 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acctcctcgatctccccctgcaggcccttcagcacctcgtccgggctcaggtaggttcta 495

                                                                       
Query: 304 gtctacacagagggaaagacgggcaacctaagacgtccctgacagcgacatctggcggcc 363
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 496 gtctacacagagggaaagacgggcaacctaagacgtccctgacagcggcatctggcggcc 555

                                                                       
Query: 364 atccctcctggagtgatctggacaca--------tggaagaaggcctgtcctcccaagac 415
           ||||||||||||||||||||||||||        ||||||||||||||||||||||||||
Sbjct: 556 atccctcctggagtgatctggacacagcgagtactggaagaaggcctgtcctcccaagac 615

                                                                       
Query: 416 tcctctcctgttcaggctacagcagactaggggtcatcagacatgggagacatatggtgt 475
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tcctctcctgttcaggctacagcagactaggggtcatcagacatgggagacatatggtgt 675

                                                                       
Query: 476 tttcttgctcctatggataggctacaagcaggattttttttttttttagatttatttatt 535
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 676 tttcttgctcctatggataggctacaagcaggatttttttttttt--agatttatttatt 733

                                                                       
Query: 536 atatgtaagtacactgtagttgttttcagacacaccagaagagggtgtcagatctcatta 595
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 atatgtaagtacactgtagttgttttcagacacaccagaagagggtgtcagatctcatta 793

                            
Query: 596 tggatggttgtgagcca 612
           |||||||||||||||||
Sbjct: 794 tggatggttgtgagcca 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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