Query= MSMg01no474_b23.b1 MSMg01no474_b23.b1 CHROMAT_FILE:
MSMg01no474_b23.b1 PHD_FILE: MSMg01no474_b23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:27 2005
(254 letters)
>mm_chr11_12354815_12355468
Length = 654
Score = 460 bits (238), Expect = e-134
Identities = 246/250 (98%), Gaps = 3/250 (1%)
Strand = Plus / Plus
Query: 1 cagcaccaatgtaacatctcaagcatacaacttccctctaaggttactgctcaggtgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcaccaatgtaacatctcaagcatacaacttccctctaaggttactgctcaggtgcct 260
Query: 61 gtctaaggaccaatgcttcccacaaaccaacagttaaaatagagtcatctacttgagtca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 gtctaaggaccaatgcttcccacaaaccaacagttaaaatagagtcatctacttgaatca 320
Query: 121 tctactgtgaccatttaaaacagaaacacagatgctgctcaggcttctccatccaacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctactgtgaccatttaaaacagaaacacagatgctgctcaggcttctccatccaacaca 380
Query: 181 ggcacaacaaaccaattcaacttgaaaaaagaagaagaagaagaaggaggaggaggagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcacaacaaaccaattcaacttgaaaaaagaagaagaagaagaaggaggaggaggag-- 438
Query: 241 gaaggaggag 250
|||||||||
Sbjct: 439 -aaggaggag 447
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space: 158025
Effective search space used: 158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no474_b23.g1 MSMg01no474_b23.g1 CHROMAT_FILE:
MSMg01no474_b23.g1 PHD_FILE: MSMg01no474_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:27 2005
(245 letters)
>mm_chr11_12537378_12538026
Length = 649
Score = 420 bits (217), Expect = e-122
Identities = 240/251 (95%), Gaps = 8/251 (3%)
Strand = Plus / Minus
Query: 1 actcactgcactccctcccaaagtctataactcttcagaagttccacctttgaattccta 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 449 actcactgcactccctcccaaagtctataactcttcagaagtttcacctttgaattccta 390
Query: 61 cctttggtacgggttttttaatgagtcgatctaaaggtgatggggtgtttacaaaatatg 120
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 389 cctttgctacgggttttttaatgagtcaatctaaaggtgatggggtgtttacaaaatatg 330
Query: 121 aggtagccatatgaataacaatatccaaagg--cagtcca----gcctttaactctctgc 174
|||||||||||||||||||||||||||| | ||||||| ||||||||||||||||
Sbjct: 329 aggtagccatatgaataacaatatccaa--gtccagtccagcctgcctttaactctctgc 272
Query: 175 tggcacagaaatcagaataaagataatacaaagacaatctttaatagagagtaggggaag 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggcacagaaatcagaataaagataatacaaagacaatctttaatagagagtaggggaag 212
Query: 235 gttggagggga 245
|||||||||||
Sbjct: 211 gttggagggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 649
Length adjustment: 9
Effective length of query: 236
Effective length of database: 640
Effective search space: 151040
Effective search space used: 151040
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
