BAC Information

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BAC

Clone NameMSMg01-474C04
Chromosome11 (Build37)
Map Location 61,171,762 - 61,357,077
singlet/doubletdoublet
Overlap gene1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2
Upstream geneLrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik
Downstream geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474C04.T7 (MSMg01no474_c04.b1)MSMg01-474C04.TJ (MSMg01no474_c04.g1)
ACCAG556269AG556270
length733734
length of high quality
(start - end)		431 (70 - 500)474 (79 - 552)
definitionCHROMAT_FILE: MSMg01no474_c04.b1 PHD_FILE: MSMg01no474_c04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:28 2005CHROMAT_FILE: MSMg01no474_c04.g1 PHD_FILE: MSMg01no474_c04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:52:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,356,647 - 61,357,077)(61,171,762 - 61,172,235)
sequence
CTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAATGGGTAACTAAAAAATGGGGCTTCTCTTTTGCCTAATTAAT
AATGCATCCTGGTCAGAGCTACACTGTTGCAGGTTAAACTGGAAACAGAT
TTTCACTGTTGCTCACAAGAAAATAGTCTCAGTCTAATCTCCCTTTGGTC
ATAAATGGGTTCTCACTGGAGAAGAAAGCTCTCTTCTACTTTTGTCCAAG
GGGCACCAACAGCAAGCCTTTGTGTAATTTCCCTGATAAGGTAGCCAACC
TCTATTGAGCCCTGGAGACTTATCTCACTCATTCATGCCTCACTAATATT
ACAACCTGCTTAACTTGAGTATTTCTGTGATCATTATATTTAGATCTGGG
ATATTTTCCTTTGTGTCCTGTCTTCTAAGAGTTTGTATGGGCTTTTGGCT
TTACTGTTTGGAAAGGTAAGAAAGACCAGCTTTACACAGTTACTGATGTC
AGGGTTAGAACTGTTTGGAAGGCTTTCCCAGCGACATGTATAGTGCATAC
CCATTATTTTGCTACCACTTACTTAGGATCTGATCTCAGGCTCTCCTATA
GCTTCNTGGATTTCTTTCCCTTTTCCTCAGTCCTAGTCTTTGAATCATTC
TGTATTTGTTTGAGATGGGTAACCCCCTTCGTCTCCAAACTCTGTTCCCT
AACTTTCCCGTATTCCTATATTCCTCTACTGTT

NTCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTGGAAGGGAAAGAGACAATT
GCATTCAGGATTCACCGAGGCACACTCACCTGAGACAGACACCCCCAGGA
CATGAGGCTTCCTTGGCAGGGAGCTCAGGTGAGCTAGCCTCCAGGACTCC
ACCTGCAACTGTAGGCAGAGGGGACTTGTTCTTCCCTCAGCCTCCAAAAG
CCTCCACTGCCAGGCTGTAGATGAGGACCTGATTGCTCCCACAACGGTTT
GAGCCTCTAGATTCAAGGACTCCCAGTGCCCCCATGGAGCTGCTGCCCTG
GATATGTGTAGAGCTGCAACACAGCTCAGACCCACTCCTTGTTTTTGACC
AGGGGCAGCTTTTGGTTGACATCTTCAAGCTCTTGGGAGCTCTGAGCTAC
AACACTTCTCAGAGCTCTATCAGCACTTGGCTAGCATTGATCTCTTTCCA
TTCATTTTATCCTATTCATATTGTTTATACTGAACTGACAAACGCATCTC
TTATTTGCAGTAGGCTGATGCTAAAACAGTTTCCGACTTTGAAGCCTTTT
TTTTTCTTTTTCTAAGAAACTAGTGGCTTATCTAGTCCACACAACCTGGA
GTGTAGATTTCTACCACTTAAACTTTCTATGCTCCCTCTTGCCTGATTTG
GTCACTCGTTTCCATCACTCCTGTACTTTTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_c04.b1 MSMg01no474_c04.b1 CHROMAT_FILE:
MSMg01no474_c04.b1 PHD_FILE: MSMg01no474_c04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:28 2005
         (431 letters)



>mm_chr11_61356447_61357277
          Length = 831

 Score =  803 bits (415), Expect = 0.0
 Identities = 427/431 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaatggggcttctcttttgcctaattaataatgcatcctggtcagagctacactgttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aaaaatggggcttctcttttgcctaattaataatgcatcctggtcagagctacactgttg 572

                                                                       
Query: 61  caggttaaactggaaacagattttcactgttgctcacaagaaaatagtctcagtctaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caggttaaactggaaacagattttcactgttgctcacaagaaaatagtctcagtctaatc 512

                                                                       
Query: 121 tccctttggtcataaatgggttctcactggagaagaaagctctcttctacttttgtccaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 511 tccctttggtcataaatgggttctcactggagaagaaagctctcttctacttttgcccaa 452

                                                                       
Query: 181 ggggcaccaacagcaagcctttgtgtaatttccctgataaggtagccaacctctattgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggggcaccaacagcaagcctttgtgtaatttccctgataaggtagccaacctctattgag 392

                                                                       
Query: 241 ccctggagacttatctcactcattcatgcctcactaatattacaacctgcttaacttgag 300
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 ccctggagacagatctcactcattcatgcctcactaatattacaacctgcttaacttgag 332

                                                                       
Query: 301 tatttctgtgatcattatatttagatctgggatattttcctttgtgtcctgtcttctaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tatttctgtgatcattatatttagatctgggatattttcctttgtgtcctgtcttctaag 272

                                                                       
Query: 361 agtttgtatgggcttttggctttactgtttggaaaggtaagaaagaccagctttacacag 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 271 agtttgtatgggcttttggctttactgtttggaaaggtaaggaagaccagctttacacag 212

                      
Query: 421 ttactgatgtc 431
           |||||||||||
Sbjct: 211 ttactgatgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no474_c04.g1 MSMg01no474_c04.g1 CHROMAT_FILE:
MSMg01no474_c04.g1 PHD_FILE: MSMg01no474_c04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:52:28 2005
         (474 letters)



>mm_chr11_61171562_61172435
          Length = 874

 Score =  878 bits (454), Expect = 0.0
 Identities = 469/474 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggaagggaaagagacaattgcattcaggattcaccgaggcacactcacctgagacag 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 agtggaagggaaagagacaactgcattcaggattcaccgaggcacactcacatgagacag 260

                                                                       
Query: 61  acacccccaggacatgaggcttccttggcagggagctcaggtgagctagcctccaggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacccccaggacatgaggcttccttggcagggagctcaggtgagctagcctccaggact 320

                                                                       
Query: 121 ccacctgcaactgtaggcagaggggacttgttcttccctcagcctccaaaagcctccact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 ccacctgcaactgtaggcagaggggacttgttcttccctcagcctccaaaagcctccacc 380

                                                                       
Query: 181 gccaggctgtagatgaggacctgattgctcccacaacggtttgagcctctagattcaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccaggctgtagatgaggacctgattgctcccacaacggtttgagcctctagattcaagg 440

                                                                       
Query: 241 actcccagtgcccccatggagctgctgccctggatatgtgtagagctgcaacacagctca 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acacccagtgcccccatggagctgctgccctggatatgtgtagagctgcaacacagctca 500

                                                                       
Query: 301 gacccactccttgtttttgaccaggggcagcttttggttgacatcttcaagctcttggga 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gacccactccttgcttttgaccaggggcagcttttggttgacatcttcaagctcttggga 560

                                                                       
Query: 361 gctctgagctacaacacttctcagagctctatcagcacttggctagcattgatctctttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctctgagctacaacacttctcagagctctatcagcacttggctagcattgatctctttc 620

                                                                 
Query: 421 cattcattttatcctattcatattgtttatactgaactgacaaacgcatctctt 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cattcattttatcctattcatattgtttatactgaactgacaaacgcatctctt 674


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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