Query= MSMg01no476_o21.b1 MSMg01no476_o21.b1 CHROMAT_FILE:
MSMg01no476_o21.b1 PHD_FILE: MSMg01no476_o21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:12 2005
(252 letters)
>mm_chr11_66062398_66063047
Length = 650
Score = 404 bits (209), Expect = e-117
Identities = 241/253 (95%), Gaps = 4/253 (1%)
Strand = Plus / Plus
Query: 1 tcttgagaatgatgacccagctaagcaacataaacataggctgaggaagaaagaagtgtg 60
|||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tcttgagaatgatgacccggctaagcaacatggacataggctgaggaagaaagaagtgtg 260
Query: 61 tgtgtgtcct-acaattgtagagttggggacagaacaaagctaagcttgagttgaataca 119
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgt---ctaacaattgtagagttggggacagaacaaagctaagcttgagttgaataca 317
Query: 120 gaagtaacattgaatgacctatggaggtagagctaagggcaagggggagacggagaagaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaagtaacattgaatgacctatggaggtagagctaagggcaagggggagacggagaagaa 377
Query: 180 acacttggtatgctgggacagcaaggagaccatggcaacagcagaaggaaaatgctaatt 239
||| |||| |||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct: 378 acagttgggatgctgggacagtaaggagaccatggcaacggcagaaggaaaatgctaatg 437
Query: 240 gaccaacaagcta 252
|||||||||||||
Sbjct: 438 gaccaacaagcta 450
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 252
Length of database: 650
Length adjustment: 9
Effective length of query: 243
Effective length of database: 641
Effective search space: 155763
Effective search space used: 155763
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no476_o21.g1 MSMg01no476_o21.g1 CHROMAT_FILE:
MSMg01no476_o21.g1 PHD_FILE: MSMg01no476_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:12 2005
(200 letters)
>mm_chr11_66234037_66234636
Length = 600
Score = 360 bits (186), Expect = e-104
Identities = 195/198 (98%)
Strand = Plus / Minus
Query: 3 ctctggctctgcctctggctctggctctgcctctgcctctgcctctgcctctgcctctgc 62
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 482 ctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgc 423
Query: 63 ctctgcctctgcctctgcctctgcggtcctctcccttcactaccatctctggcctcatta 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ctctgcctctgcctctgcctctgcggtcctctcccttcactaccatctctggcctcatta 363
Query: 123 tcttgctcaacccaccagaggtatgtggcctctgtccagtaccatccatcttatatgttc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcttgctcaacccaccagaggtatgtggcctctgtccagtaccatccatcttatatgttc 303
Query: 183 cctactgctcaataggcc 200
||||||||||||||||||
Sbjct: 302 cctactgctcaataggcc 285
Score = 143 bits (74), Expect = 6e-39
Identities = 83/86 (96%)
Strand = Plus / Minus
Query: 1 ggctctggctctgcctctggctctggctctgcctctgcctctgcctctgcctctgcctct 60
||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 598 ggctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctct 539
Query: 61 gcctctgcctctgcctctgcctctgc 86
||||||||||||||||||||||||||
Sbjct: 538 gcctctgcctctgcctctgcctctgc 513
Score = 143 bits (74), Expect = 6e-39
Identities = 80/82 (97%)
Strand = Plus / Minus
Query: 5 ctggctctgcctctggctctggctctgcctctgcctctgcctctgcctctgcctctgcct 64
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ctggctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcctctgcct 541
Query: 65 ctgcctctgcctctgcctctgc 86
||||||||||||||||||||||
Sbjct: 540 ctgcctctgcctctgcctctgc 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 105
Number of extensions: 34
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 10
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space: 113664
Effective search space used: 113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
