BAC Information

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BAC

Clone NameMSMg01-477I04
Chromosome11 (Build37)
Map Location 17,628,487 - 17,628,833
singlet/doubletsinglet
Overlap genenone
Upstream geneEgfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748
Downstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-477I04.T7 (MSMg01no477_i04.b1)MSMg01-477I04.TJ (MSMg01no477_i04.g1)
ACCAG558844AG558845
length718732
length of high quality
(start - end)
573 (44 - 616)347 (82 - 428)
definitionCHROMAT_FILE: MSMg01no477_i04.b1 PHD_FILE: MSMg01no477_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:58 2005CHROMAT_FILE: MSMg01no477_i04.g1 PHD_FILE: MSMg01no477_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:56:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAACCTATAXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAGATCCGCGG
AATTCTTGGGATCTTACTATTGTATGAGGCCACCAAAGAGACCAAAAACT
TTGTCTGAACCTTAGAACAGTAAAAGGCATTTAGCAAGATGAAATGGGCC
CTGCTGTCAACATCTCCTCTGGGATTACCTGACATGACAAAGTCCTTTCA
CCTATATATAGATGAAAACAAGGGAATGGCAAAAGGGGTCTTAACTCAGA
TTCTAGGACTCTGTAAATGCTGGCAGTAAACTTGTCAAAGAAGCGAGATC
CGGTGGCAGTAGAGTGGCCTCCCAGCTTACATGTCATAACCAGCCTTGCT
GGTTAAAGATGCTGATAAGCTCACTCTGGAACAGACACTGATTATCAGCA
TCTCTCATGTGATTGAGGGGGTGCTCAGGCAACCCCAGACAGATGGCTTA
GTAATGACAGGGTGACCCACTACCAGACCCTCCGACATAAGCCCTGGCAT
AATAATCTTCCAGCTACCCACTACCTTGAATCCTGCCACCCTCCTGTAAG
ACCTGGACCTCAGCCAGCCAATACATGAATGTGCAGAGGTCCTCACCCCG
GTCTGCTGTAATCAGCCAGATTTGATGGGTATGCCACTACCCAACACAGA
TCAGACTTGGTTCATTGATGGTAGCAGTTCCTGCCTAATGGGAAGTGTCA
TGTGGGGAGTGCCATTGA
AAAAAACCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGGGCAGTCGAGGGTGA
CCTTAAACTCTTCCTTTTCTGTTTTTATTTTTTAACATTAATTTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTTTAGAGGCATAGATGCATGATGCATG
TGTGGAAGTCAAAGGCACCTTGTGGAAGTCCTTTGTCTCCTTCACCATGT
GAACTCTGAAGATCAAATTCAGGGTCTCAGGCTTAGCAGCAAGTGCCTTA
CTTGTTGAGCAATCTTGCTATCTTTTCATAACCCTGAACTTTTAATTTTC
CTGCCTCAGCTAGACTTTTGTTTTAAAGTATTTCAACAAACATAATAATT
GTGGGTATATATGTGTGATATTTCAATTCATCTATCTATCATCTATCTAT
CTATCTATCTATCCATCTATCTATCTATCAATCTATCTATCTTTTTTGGA
GAATAATGATTTGTTAGAATCCTTGGAAACATAAGGGAAATTTAATTTAG
GTAAAAAGGAATTACCCTTCTAATAATCCCCNTTCCCCTCTATTAGGAAA
CCCCAAGGGTTGCCCAAAAAAAAAATTTTTTTTTTTTTGAAAAAAAAAAT
TGCCTTTAAAAAAAAGGGGTTTGGGAAAAATTTTGGGGCGTGGGGGAAAA
ACAACCTTTTAAAAGCCTTTATTCCCCCGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no477_i04.g1 MSMg01no477_i04.g1 CHROMAT_FILE:
MSMg01no477_i04.g1 PHD_FILE: MSMg01no477_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:56:58 2005
         (347 letters)



>mm_chr11_17628287_17629033
          Length = 747

 Score =  640 bits (331), Expect = 0.0
 Identities = 343/351 (97%), Gaps = 8/351 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgggcagtcgagggtgaccttaaactcttccttttctgtttttattttttaacattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgggcagtcgagggtgaccttaaactcttccttttctgtttttattttttaacattaa 260

                                                                       
Query: 61  tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttagaggcatagatgcatgatgcatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttagaggcatagatgcatgatgcatgt 320

                                                                       
Query: 121 gtggaagtcaaaggcaccttgtggaagtcctttgtctccttcaccatgtgaactctgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggaagtcaaaggcaccttgtggaagtcctttgtctccttcaccatgtgaactctgaag 380

                                                                       
Query: 181 atcaaattcagggtctcaggcttagcagcaagtgccttacttgttgagcaatcttgctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaaattcagggtctcaggcttagcagcaagtgccttacttgttgagcaatcttgctat 440

                                                                       
Query: 241 ctttt----cataaccctgaacttttaattttcctgcctcagctagacttttgttttaaa 296
           |        |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 c----gagccataaccctgaacttttaattttcctgcctcagctagacttttgttttaaa 496

                                                              
Query: 297 gtatttcaacaaacataataattgtgggtatatatgtgtgatatttcaatt 347
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtatttcaacaaacataataattgtgggtatatatgtgtgatatttcaatt 547


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)