BAC Information

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BAC

Clone NameMSMg01-478M02
Chromosome11 (Build37)
Map Location 18,915,884 - 18,916,215
singlet/doubletsinglet
Overlap geneMeis1
Upstream geneLOC627696, LOC627716, LOC665796
Downstream geneLOC635455, LOC100042708, Glns-ps1, LOC665868, LOC100041937, Spred2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-478M02.T7 (MSMg01no478_m02.b1)MSMg01-478M02.TJ (MSMg01no478_m02.g1)
ACCAG559796AG559797
length734737
length of high quality
(start - end)
543 (36 - 578)333 (311 - 643)
definitionCHROMAT_FILE: MSMg01no478_m02.b1 PHD_FILE: MSMg01no478_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:32 2005CHROMAT_FILE: MSMg01no478_m02.g1 PHD_FILE: MSMg01no478_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:58:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAAC
TGTACAATACCGAATGGCTGAGAAGCACCTAAAGGAATTCAACATCCTTA
GTCATCAGGCAAATGCAAATCAAAACAACCCTGAGATTCCATCTCACTCC
AGTCAGAATGAGATCAAAAACTCAGGTGACATAAGAGGCTCTGCCTGACA
AATACAGAGGCAGATGCTAGCAGCCAACTGAATACAGAGTCCTAGATGGA
GGAGTTGGAGAAGTAACTGAGGAAGCTGAGATTGTTTGCAGCCCATTGGG
GGGGGGGAGGGTTACAACAGTGTCAACTGGTCAGACCCCCTGGAGCTCCC
AGGGACTGGACCACCACCCAAAGAGTACACGTGGAGGGGCCCATGGCTCT
AGCTGCATATGTAGCAGAAGATGGCCTCGTTGGACATCAGTGAGAGTAGC
GGCCCCTGGGCCTTAGGGTGTAAAATACCCCAGTGTAGGGGAATGCCAGG
GCAGGAAGATAGGCATGGGTCAGTGGGGGAGCACTCTCATAGAGGCGGGG
TGGTGGTGGAATGGGATAGGGGTTTNTNNNNNNNNNNTNNTNNTNNNTTN
NTTNNTTTTNTTTTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTGTTT
TTTTTTTTTTTTTGGTTTTTTTTTNTTTTTNTTTTTTGTTNGTGTTTTGG
TTTGGTGTTTTTGTTTTTGTTTTTTGGTGTTGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXGGTTGAAGGATCCTGTTGTACTGATCTAAGCTCGGTGCC
CTAACGTTCCCGGTTACCCGCCTGGCCTCTGACCCTTCTTTTTCTCTCCT
GTTTGTCATGCAGTACGACGACCTACCCCATTATGGGGGTATGGATGGAG
TAGGCATCCCCTCCACGATGTATGGGGACCCGCATGTAGCCAGGTCCATG
CAACCGGTCCACCACCTGAACCACGGGCCTCCTCTGCACTCGCATCAGTA
CCTTTTTATAGCTCACACCAACGCCATGGCCCCCAGCATGGGTTCCTCGG
TCAATGACGCTTTAAAGAGAGATAAAGATGCCATTTATGGGTAGGTATAA
TGGGCAGGAGTTAAGGAGTTGAGGCGCGATGCTTCCCCCATTTCCCAAGC
CCTTGCAACCGGAAAGTCAGAGCACTCTAGATTAGAAGTACAATTCACAG
TGCGTGGAAACTGGTTTGGGGTGGAGCGGGGGAGCCTCCTCCCGATTCAG
CGCCCGGCTTGGCCGCCACGTTGGTCGCATAGGAGTCCCAGTGCTGGAGT
GGCCGTCTAAAGATTCCGAATCCCCTCTCAGACTCGAGTCAGCAAATCTG
AGATCTTGCTCGCTAGACTTAGCTCGAGCGTTGGGGAGTTTCTAAGGGTA
GGCGCCTTAGTTTAGGGAAAATCTTTTAAGCCATTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no478_m02.g1 MSMg01no478_m02.g1 CHROMAT_FILE:
MSMg01no478_m02.g1 PHD_FILE: MSMg01no478_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:58:32 2005
         (333 letters)



>mm_chr11_18915684_18916415
          Length = 732

 Score =  605 bits (313), Expect = e-177
 Identities = 328/333 (98%), Gaps = 1/333 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctcacaccaacgccatggcccccagcatgggttcctcggtcaatgacgctttaaagaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gctcacaccaacgccatggcccccagcatgggttcctcggtcaatgacgctttaaagaga 473

                                                                       
Query: 61  gataaagatgccatttatgggtaggtataatgggcaggagttaaggagttgaggcgcgat 120
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 472 gataaagatgccatttatgggtaggtataatgggcaggagttaaggag-tgaggcgcgat 414

                                                                       
Query: 121 gcttcccccatttcccaagcccttgcaaccggaaagtcagagcactctagattagaagta 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 413 gcttcccccatttcccaagcccttgcaaccggaaagtcagagcactctagattagaggta 354

                                                                       
Query: 181 caattcacagtgcgtggaaactggtttggggtggagcgggggagcctcctcccgattcag 240
           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 353 caattcacagtgcgtggaaactggtttggggtatagcgggggagcctcctcccgattcag 294

                                                                       
Query: 241 cgcccggcttggccgccacgttggtcgcataggagtcccagtgctggagtggccgtctaa 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 293 cgcccggcttggccgccacgttggtcgcaaaggagtcccagtgctggagtggccgtctaa 234

                                            
Query: 301 agattccgaatcccctctcagactcgagtcagc 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 agattccgaatcccctctcagactcgagtcagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 732
Length adjustment: 9
Effective length of query: 324
Effective length of database: 723
Effective search space:   234252
Effective search space used:   234252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)