Query= MSMg01no479_k24.b1 MSMg01no479_k24.b1 CHROMAT_FILE:
MSMg01no479_k24.b1 PHD_FILE: MSMg01no479_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:46 2005
(552 letters)
>mm_chr11_44112751_44113698
Length = 948
Score = 1017 bits (526), Expect = 0.0
Identities = 544/552 (98%), Gaps = 4/552 (0%)
Strand = Plus / Minus
Query: 1 ttactatttgcagtggtcccgtgtacaaatgtgcaggttgtgcacagtgcaaaacttaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttactatttgcagtggtcccgtgtacaaatgtgcaggttgtgcacagtgcaaaacttaca 625
Query: 61 ctgtagtctgtgcatggcacttcttggcagagtccaaatgcagccttttatgaaaatttt 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctgtagtctgtgcatgtcacttcttggcagagtccaaatgcagccttttatgaaaatttt 565
Query: 121 gctttataccttgcttgacatggtacaaagttcaggtttgtgtggaagaacttgagcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gctttataccttgcttgacatggtacaaagttcaggtttgtgtggaagaacttgagcagg 505
Query: 181 gtgcttctaagtggaccaggagagaaggagctagactgtattgaatacggtttgtcaggt 240
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 504 gtgcttctaagtggaccaggagagaaggagctagactctattgaatacggtttgtcaggt 445
Query: 241 cctgaactaaatgtcttctcacatgtatttattatgaatatgggcatttcttaaaataca 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 444 cctgaactaaatgtcttctcacatgtatttattatgaatataggcatttcttaaaataca 385
Query: 301 taactatttatgaatgtaccagagttatatgtttataaagaagagaacctagtacaatca 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatctatttatgaatgtaccagagttatatgtttataaagaagagaacctagtacaatca 325
Query: 361 actctatattcactgattttaatataaaaaaaatcctaagtgacaaggcagtcaagtgtc 420
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 324 actctatattcactgattttaatataaaaaaaatcctaagtgaca----agtcaagtgtc 269
Query: 421 atattgacttagtgtgatagttgatttttgtcaacttggcacaaacctagatggatctag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 atattgacttagtgtgatagttgatttttgtcaacttggcacaaacctagatggatctag 209
Query: 481 aagaatatatcccaactgagaaattgcctcaactagattggtctttgggcgcgtggaggg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aagaatatatcccaactgagaaattgcctcaactagattggtctttgggcgcgtggaggg 149
Query: 541 ggcattttctcg 552
||||||||||||
Sbjct: 148 ggcattttctcg 137
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 948
Length adjustment: 10
Effective length of query: 542
Effective length of database: 938
Effective search space: 508396
Effective search space used: 508396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no479_k24.g1 MSMg01no479_k24.g1 CHROMAT_FILE:
MSMg01no479_k24.g1 PHD_FILE: MSMg01no479_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:59:46 2005
(487 letters)
>mm_chr11_43937073_43937962
Length = 890
Score = 855 bits (442), Expect = 0.0
Identities = 477/490 (97%), Gaps = 3/490 (0%)
Strand = Plus / Plus
Query: 1 tcatattaggagggcatcatcacactagaattgggaaacagaaaaacaagtctgcatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatattaggagggcatcatcacactagaattgggaaacagaaaaacaagtctgcatgca 260
Query: 61 gcaggcccagcccagtagggagtctgtgagttcccttgaagtaggaaagctacagctact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaggcccagcccagtagggagtctgtgagttcccttgaagtaggaaagctacagctact 320
Query: 121 ttgtcagatcatagctggatattctggacctgggttataaaaataaggaaggactaaggg 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ttgtcagatcatagctggatattctggacctgggctataaaaataaggaaggactaaggg 380
Query: 181 aaaaaggcctttacaccgg---aaaaaaaatcctacactgttgctttggattaggaagta 237
||| |||||||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aaagaggcctttacacaggaaaaaaaaaaaccctacactgttgctttggattaggaagta 440
Query: 238 gagtaaggtaagcactgtggtttggattttaaatatttccaacttgattcccaacctgtg 297
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gagtaaggtaagcactgtggtttggatcttaaatatttccaacttgattcccaacctgtg 500
Query: 298 ctaccagtacaaaagtggtggagtctttggaaattgaggctgagtagaagggaggaagat 357
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 ctaccagtacaaaagtggtggagtctttggggattgaggctgagtagaagggaggaagat 560
Query: 358 agaaccttaagggtacatccttgaaggtgatgttgggttatgttcctctttttccctccc 417
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 561 aggaccttaagggtacatccttgaaggtgatgttgggtcatgttcctctttttccctccc 620
Query: 418 acccctgcccagatgctttacaacccgttccccagcatgctgatgctctggcccactata 477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acccctgcccagatgctttaccacccgttccccagcatgctgatgctctggcccactata 680
Query: 478 ggctccagat 487
||||||||||
Sbjct: 681 ggctccagat 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 890
Length adjustment: 10
Effective length of query: 477
Effective length of database: 880
Effective search space: 419760
Effective search space used: 419760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
