BAC Information

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BAC

Clone NameMSMg01-480O20
Chromosome11 (Build37)
Map Location 117,796,097 - 117,973,870
singlet/doubletdoublet
Overlap geneSocs3, Pgs1, Dnahc17
Upstream geneMgat5b, LOC100042036, Sec14l1, Sept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1
Downstream genePscd1, Usp36, Timp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480O20.T7 (MSMg01no480_o20.b1)MSMg01-480O20.TJ (MSMg01no480_o20.g1)
ACCAG561452AG561453
length731726
length of high quality
(start - end)
575 (77 - 651)243 (331 - 573)
definitionCHROMAT_FILE: MSMg01no480_o20.b1 PHD_FILE: MSMg01no480_o20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:23 2005CHROMAT_FILE: MSMg01no480_o20.g1 PHD_FILE: MSMg01no480_o20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,796,097 - 117,796,661)(117,973,628 - 117,973,870)
sequence
NACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGAGATGC
GCGGAATTCACACTCCATGCTGCAAGGTGGGCCTGAGATGGGCCTCACAC
CTCTCCCCCTGTTCCCATCAGTATCCGGTCTGTGTTTTCAGGCTGAGGCA
ATCTTCAGGTGCCTGTGCAGAATGCCCTGCCCTTGTGTAAGCTACCAAGC
ACCAGCCACTTGCAGGATCTTTCTCTCTTCAGAAGACTTCTTCCAACTTC
CATCTCCGTGGAGAGTATTCTGGGTCTTTCAGTGTGCTGAATGCATAGAC
TGCTGAGGGGCGTCTCTGCAGTATGTTGTATGGATGCTTCCATAATCCAG
CTTCTTACAGATGCTCTGAGAATCATAGATGAATCTTCTCCCTCTCCTCA
GGATAATGTGGCAACCAGCTCTGACCCCAGCACCTTGCAGCCAGATGTGG
GTCTGCTGCAGGGGCCTGGGAGCCACATCCCATCTCTCTTGTGCTGTTAG
CCCCACATCCCACCTCTTGTGCTGTTAGCCACATCTGTTGCTCTGACCTC
TGCTGTGCTCAGTGAGAGGGGAGGAAGGGTCCGGGTCTGAGGCAGCTGGG
GAATTCGGCTTTGGAATCCGGACAGCAACCCCCAGGAAACTTTCCACCAT
GGTGTCTTGGCTCCTGAGGAGACAGGAAAGATGATCATGTTCCTCAGAAG
AGAGGAGAGAGCTCCCATGTTCCCCCGGACG
NCCCGATGATAGGGGAGGCCTGGNGGNCGCCTGGCCTCATAAACAGGGTG
AACTATAGAAGGATTTCAAAAACACAGTTTTCCCTTGACTGGCACACTCA
CGCCCCCAAGAACTCCCCTTAGGGCCCTCTGCACAGGTGCTCACAGATCC
CAGGGTACCGGAGACACAGGAAGGCTCCCTCCCAAGAGAGCATGGTGGAG
GGGCCAGACTGAGTGTGCCATCCCTGAAAGGGCTGTGGTTTCCCTCCAGG
AGTGGTCAGCCAACCCCCTGTTTGAAAGGAAGGACAACAAGAAGGAAGCC
CTGTTGGACCTGGACGGCATGTTGTCCAACCTGAACAAGCGGTACGCTGC
GGTCAAGGAAGCTGGTGTGAGAATCCAAGCCATGGTTGTGGTAAGGAGAC
CCCCCCAGGGGGTCTTTTGGAAGCTGCTTGCTTTTTATAGAGGGGAAGAG
AAAAGAGGAGTAGCCAAGCATTTTATTAAGATGACCAATCAGAAGTGTTC
TGATGACCACAGAGTCTGTTAGATTTCATCTAAGACAGCCTGACCCAAGA
GCAGCTTCAAAGCCCGGTTCCTGTTGTTACACGCCTGTGCTCTATCTAAA
AGTGGCCAGAGCACCACCAACCCCTGCCTTTAAGTCCATATGTGCCCGGT
GACATCTTCCCCTAAGCCAACAGGGACAAGGCTGCTGCGAGCTTACATGT
ATCCTTTCACGGGTTCCCCCTCCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_o20.b1 MSMg01no480_o20.b1 CHROMAT_FILE:
MSMg01no480_o20.b1 PHD_FILE: MSMg01no480_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:23 2005
         (575 letters)



>mm_chr11_117795897_117796871
          Length = 975

 Score = 1054 bits (545), Expect = 0.0
 Identities = 560/565 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgggcctgagatgggcctcacacctctccccctgttcccatcagtatccggtctgtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgggcctgagatgggcctcacacctctccccctgttcccatcagtatccggtctgtgtt 260

                                                                       
Query: 61  ttcaggctgaggcaatcttcaggtgcctgtgcagaatgccctgcccttgtgtaagctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaggctgaggcaatcttcaggtgcctgtgcagaatgccctgcccttgtgtaagctacc 320

                                                                       
Query: 121 aagcaccagccacttgcaggatctttctctcttcagaagacttcttccaacttccatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagcaccagccacttgcaggatctttctctcttcagaagacttcttccaacttccatctc 380

                                                                       
Query: 181 cgtggagagtattctgggtctttcagtgtgctgaatgcatagactgctgaggggcgtctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 cgtggagagtattctgggtctttcagtgtgctgaatgcatagactgctgaggggtgtctc 440

                                                                       
Query: 241 tgcagtatgttgtatggatgcttccataatccagcttcttacagatgctctgagaatcat 300
           ||||||| | ||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagtaggctgggtggatgcttccataatccagcttcttacagatgctctgagaatcat 500

                                                                       
Query: 301 agatgaatcttctccctctcctcaggataatgtggcaaccagctctgaccccagcacctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agatgaatcttctccctctcctcaggataatgtggcaaccagctctgaccccagcacctt 560

                                                                       
Query: 361 gcagccagatgtgggtctgctgcaggggcctgggagccacatcccatctctcttgtgctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcagccagatgtgggtctgctgcaggggcctgggagccacatcccatctctcttgtgctg 620

                                                                       
Query: 421 ttagccccacatcccacctcttgtgctgttagccacatctgttgctctgacctctgctgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagccccacatcccacctcttgtgctgttagccacatctgttgctctgacctctgctgt 680

                                                                       
Query: 481 gctcagtgagaggggaggaagggtccgggtctgaggcagctggggaattcggctttggaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcagtgagaggggaggaagggtccgggtctgaggcagctggggaattcggctttggaa 740

                                    
Query: 541 tccggacagcaacccccaggaaact 565
           |||||||||||||||||||||||||
Sbjct: 741 tccggacagcaacccccaggaaact 765


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no480_o20.g1 MSMg01no480_o20.g1 CHROMAT_FILE:
MSMg01no480_o20.g1 PHD_FILE: MSMg01no480_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:23 2005
         (243 letters)



>mm_chr11_117973428_117974070
          Length = 643

 Score =  470 bits (243), Expect = e-137
 Identities = 243/243 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgaacaagcggtacgctgcggtcaaggaagctggtgtgagaatccaagccatggttgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctgaacaagcggtacgctgcggtcaaggaagctggtgtgagaatccaagccatggttgtg 384

                                                                       
Query: 61  gtaaggagacccccccagggggtcttttggaagctgcttgctttttatagaggggaagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtaaggagacccccccagggggtcttttggaagctgcttgctttttatagaggggaagag 324

                                                                       
Query: 121 aaaagaggagtagccaagcattttattaagatgaccaatcagaagtgttctgatgaccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aaaagaggagtagccaagcattttattaagatgaccaatcagaagtgttctgatgaccac 264

                                                                       
Query: 181 agagtctgttagatttcatctaagacagcctgacccaagagcagcttcaaagcccggttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agagtctgttagatttcatctaagacagcctgacccaagagcagcttcaaagcccggttc 204

              
Query: 241 ctg 243
           |||
Sbjct: 203 ctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)