BAC Information

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BAC

Clone NameMSMg01-480P20
Chromosome11 (Build37)
Map Location 87,475,396 - 87,475,635
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem49, Ptrh2, Cltc, Dhx40, Ypel2, Gdpd1, 1200011M11Rik, LOC668816, Prr11, 1110001A07Rik, Trim37, Ppm1e, Rad51c, Tex14, Sept4, Mtmr4, Hsf5
Downstream geneRnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-480P20.T7 (MSMg01no480_p20.b1)MSMg01-480P20.TJ (MSMg01no480_p20.g1)
ACCAG561500AG561501
length725720
length of high quality
(start - end)
549 (78 - 626)243 (79 - 321)
definitionCHROMAT_FILE: MSMg01no480_p20.b1 PHD_FILE: MSMg01no480_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:27 2005CHROMAT_FILE: MSMg01no480_p20.g1 PHD_FILE: MSMg01no480_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAACACCG
CGGAATTCCAGATGCCTTCTAAGCAGGTTTAGAGCAGTGGTCCTCAACCT
TCCTGATGCTGCGACCCTTTAACACAGTTCCTCACGTTGTGGTGACCCCC
AACCACAAAAATTATTTCCTGATGACTGTAATCATGTTATTGCTATGAAT
TGTAATGTAAATATCTGATATTCAGGAGATCTGATATGTGACCTCTGTGA
CCCCAAAGGGATTGCGACTCACAGGTTGAGAACTGCTGGTTTATAGTGTT
TGTGTATATGTACGTATAGGCCCTTTTTTCGGAGATCTATATTGGCTGTC
TTCCTCATTCACTCCGTTTGAATTTTTGAGACAGGGTCTCTCACTGAACT
TGGAACTCACCAATTCAACTAGAGTGACTAGCCTTTGAGCTCCAGGATTC
CCTGCCTCTGCCTGCCCAGATCACAGGTCCCAGGCACATCCCCTAGCTGG
GGATTGAACTCAGAGCTCATGTTGTGTGCTGAGTCCTTTACCAACTGAGC
TATCTCTCCACCCTGGAGACTCTGACTACTTTAGAATCCTGCTTTTCAGT
GCACTCATCAATATTAAATCTCTCGGCAATGTGGCCTCTGTGGTAGTTAA
TCTTCACTGCTGATCAATTTAGAGTCAGCTAGAAGACACACCACTGTATC
TATGAANGTGTTTCAGAGAAGTATA
NCCCGATGATAGGNGAGGCCTGGCGGNCGCCTGGCTTTCACATCGGGGTG
AACNANAGAAGGATACAAAAAACAGGTGGAAATGGAGTTGNAGATGGTTG
TGAGCCACCATGTAAATGTTGAACACTAGACTTCAGCCCTCTGGATGAAC
AGGCAGCCAGTGCTCTTAACCACTGAGCCACTGCTCCAGCTCCAAGCATA
GGTTTAATGCTTAGCTTCTATATGCAGACTAACTTACAGTCTTACACTGG
ATTATTAGGTTTGACCCAAAGAGTAAGAGAGAAATAACAGATTCCAGACT
TCTGACAGCAACCTGATTTGAGTGATTCATCCAGGTGCAGTTTAGGCAGA
ACTTCTGAACGTAGTAAGAACTGAAGAAAAGCTATGCAGAAGTCTTTATT
CACAGTGGCAGACATAAGCAACAAGTACTCAGTATAAGATCTCTCAATTC
TGGCTTTGTGCCATTTGTAGACACTAAAACATGGGAAGAATAGAGATCTA
TTTGAATTTGTAACTGCAAGACTTTGCGCCGTTCTTTTGTCTTTTGGATG
TCTTTGTTTTCTGTTCCGTTCCTCATACCGCCGTCAGTGTGCTAGTGCTT
ACAGATTAAACACATTTGGGGTGGCCCTGATTTATCTCCTGTGGGGGAAA
GTTAAGTACTGATTGAACTGCATGCCAGTTGGCCTGTCGCTCACTAGGGG
GGAGTAAAAGAGCAGGAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no480_p20.g1 MSMg01no480_p20.g1 CHROMAT_FILE:
MSMg01no480_p20.g1 PHD_FILE: MSMg01no480_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:27 2005
         (243 letters)



>mm_chr11_87475196_87475838
          Length = 643

 Score =  420 bits (217), Expect = e-122
 Identities = 234/240 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaatggagttgnagatggttgtgagccaccatgtaaatgttgaacactagacttcagcc 60
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 gaaatggagttgtagatggttgtgagccaccatgtaaatgttgaaaactagacttcagcc 260

                                                                       
Query: 61  ctctggatgaacaggcagccagtgctcttaaccactgagccactgctccagctccaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctggatgaacaggcagccagtgctcttaaccactgagccactgctccagctccaagca 320

                                                                       
Query: 121 taggtttaatgcttagcttctatatgcagactaacttacagtcttacactggattattag 180
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||  | |||
Sbjct: 321 taggtttaatgcttagcttctatatgcagactaacttagagtcttacactggaagaatag 380

                                                                       
Query: 181 gtttgacccaaagagtaagagagaaataacagattccagacttctgacagcaacctgatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttgacccaaagagtaagagagaaataacagattccagacttctgacagcaacctgatt 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)