BAC Information

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BAC

Clone NameMSMg01-481A05
Chromosome11 (Build37)
Map Location 72,982,630 - 72,983,350
singlet/doubletsinglet
Overlap geneP2rx5
Upstream gene4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2
Downstream geneTmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-481A05.T7 (MSMg01no481_a05.b1)MSMg01-481A05.TJ (MSMg01no481_a05.g1)
ACCAG561518AG561519
length7611,024
length of high quality
(start - end)		722 (40 - 761)---
definitionCHROMAT_FILE: MSMg01no481_a05.b1 PHD_FILE: MSMg01no481_a05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:30 2005CHROMAT_FILE: MSMg01no481_a05.g1 PHD_FILE: MSMg01no481_a05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:01:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
AATCCCAGCATCCACATGATGGCTCACAACCATCCATAGTGAGATCTGAC
ACCCTCTTCTGGTGTGGCTGAAGACAGCTACAGTGTACATACTTACATAT
AATAATAAATAAAATCAAAAAAAAGAAAGAAAGGAAGCAAGCAAGCAAGC
AAGCCACAGGGCCTGTGTGAGAAGAGCAAAGGATGCTTCCGGTGGGAGTG
AGAACCAGCATGTATGTCTATGGAATGCTTTTAGGGATGCTGGTCCTAGT
CCTTTACAGGGAGACATGACAGTGGCAACGTAATGGTTCACAGAGCCCTC
TGGTACCCTGCCTGGAAGGAGTCTTAACCTCAACAATAGGGATGCTACAA
CCCTGGGAAGCCTGAGCTAACCCAATCAGGGCGGACTAATCACTGAGCAC
AGGCCTCAGAGCTGAGCATGTTGTGTGTTATGCCTGCCTGCTCCAGCAGA
GGGCTACTCCACCTTTAGTGCAGAGATGAAGAACTGAAGGCAGAGGAGGC
CCCAGTGGAGCATCTATGTTTTCCTCAACTTCTTGCTGCTACTCCTTCTC
TCAGCCTTCACCACCACCTTCTGCTGCACCCATTACCTTCAGTCCACGGC
CGTGTTCTCAGACCTCCAGACTCTCCCTATATTGTCAGAGAGCTACGCAT
GCACAACACAGCCAGCGATCCTAAAAATGACTGCCTTAGTCAGGAATGCT
CCACTTGGGGA

CTCCATCAAAGTAACTATTACATACCNCAAACGAGTTCCGACGTTCACGC
GCGCGCGTNTTTCGCGCGCGCNCGCGTCGCGATCACCACGACGACGCGTC
AGCGTCGAGCGACGCGGCCGNACGGNCGGANTATCGCGAGTCGTCGTTCG
CACTTTTCTACGTTCCTTCTTTCTTTTATATCCATTACATTCTACCTTTC
NATCATATCTCACCTCCCATACTCCCTCCCCATTCACATTAGCTCACATT
ATAATTATCCAATCATTTATAATATATACAATATAATTATTCACCACACT
CCCACATCCCCTCCTACTCCACCTATTTTATCTATCTACAATTTATCTTA
TAACAACACCACTTTATACTAACTAATTTACTTACCGCGCCAACCCTCTC
ACTCCCGTCATTCCCCTCATATTATTATCCGCGCCCCCACAATTACTATC
CTCCCTATTCTCACCAACCACATCTTTGCCTATTAATCACTACAAATATC
TCTAACCTAATCACCTTACCTTACTATATCACTACAACAACTTCTTTTTC
ACCACCTCTCCCTCTCTACTTTTACGACCCAACACACCCAATTTATTACC
ACCCTTTAATCCCTATTAATTTTCCCCATCTATACTTATTACCCCAGTAC
ACTCCATTTACTCTCCAATCTATACACCTGATATACGATCATTATAATTA
TCACATCCCATACTTTTTCTGCCGTCTTCTATAAATAATCCAACACCATC
TATCATAATAATATACTATCACCATAACCCTACTGTAAACTAACATACCT
ATAAATACTATCTATATTGCTAAAACTAATTGTAGTTCATGATGTCTATC
GTATCTACCATCACAAACGTATCTCTTAAGATACAGCTTCCATAACTTAT
AATAGCCATAAAAAAATAGACTATATCAATAACATGTCACTACATAATAA
AGAATTGCTACCCATCATCTAACCACTACCATAAACTACTAGTGTGAAAC
GTATGATAGACACTATATTTGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no481_a05.b1 MSMg01no481_a05.b1 CHROMAT_FILE:
MSMg01no481_a05.b1 PHD_FILE: MSMg01no481_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:30 2005
         (722 letters)



>mm_chr11_72982265_72983386
          Length = 1122

 Score = 1346 bits (696), Expect = 0.0
 Identities = 714/722 (98%), Gaps = 5/722 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcaaatcccagcatccacatgatggctcacaaccatccatagtgagatctgacacc 64
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 gaattcaaatcccagcaaccacatgatggctcacaaccatccatagtgagatctgacacc 1027

                                                                        
Query: 65   ctcttctggtgtggctgaagacagctacagtgtacatacttacatataataataaataaa 124
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1026 ctcttctggtgtggctgaagacagctacagtgtacgtacttacatataataataaataaa 967

                                                                        
Query: 125  atcaaaaaaaagaaagaaagg----aagcaagcaagcaagcaagccacagggcctgtgtg 180
            ||| |||||||||||||||||    |||||||||||||||||||||||||||||||||||
Sbjct: 966  atc-aaaaaaagaaagaaaggaagcaagcaagcaagcaagcaagccacagggcctgtgtg 908

                                                                        
Query: 181  agaagagcaaaggatgcttccggtgggagtgagaaccagcatgtatgtctatggaatgct 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907  agaagagcaaaggatgcttccggtgggagtgagaaccagcatgtatgtctatggaatgct 848

                                                                        
Query: 241  tttagggatgctggtcctagtcctttacagggagacatgacagtggcaacgtaatggttc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847  tttagggatgctggtcctagtcctttacagggagacatgacagtggcaacgtaatggttc 788

                                                                        
Query: 301  acagagccctctggtaccctgcctggaaggagtcttaacctcaacaatagggatgctaca 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787  acagagccctctggtaccctgcctggaaggagtcttaacctcaacaatagggatgctaca 728

                                                                        
Query: 361  accctgggaagcctgagctaacccaatcagggcggactaatcactgagcacaggcctcag 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727  accctgggaagcctgagctaacccaatcagggcggactaatcactgagcacaggcctcag 668

                                                                        
Query: 421  agctgagcatgttgtgtgttatgcctgcctgctccagcagagggctactccacctttagt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667  agctgagcatgttgtgtgttatgcctgcctgctccagcagagggctactccacctttagt 608

                                                                        
Query: 481  gcagagatgaagaactgaaggcagaggaggccccagtggagcatctatgttttcctcaac 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607  gcagagatgaagaactgaaggcagaggaggccccagtggagcatctatgttttcctcaac 548

                                                                        
Query: 541  ttcttgctgctactccttctctcagccttcaccaccaccttctgctgcacccattacctt 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547  ttcttgctgctactccttctctcagccttcaccaccaccttctgctgcacccattacctt 488

                                                                        
Query: 601  cagtccacggccgtgttctcagacctccagactctccctatattgtcagagagctacgca 660
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 487  cagtccacggccgtgttctcagacctccagactctccctacattgtcagagagctacgca 428

                                                                        
Query: 661  tgcacaacacagccagcgatcctaaaaatgactgccttagtcaggaatgctccacttggg 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427  tgcacaacacagccagcgatcctaaaaatgactgccttagtcaggaatgctccacttggg 368

              
Query: 721  ga 722
            ||
Sbjct: 367  ga 366


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 722
Length of database: 1122
Length adjustment: 10
Effective length of query: 712
Effective length of database: 1112
Effective search space:   791744
Effective search space used:   791744
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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