Query= MSMg01no481_e21.b1 MSMg01no481_e21.b1 CHROMAT_FILE:
MSMg01no481_e21.b1 PHD_FILE: MSMg01no481_e21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:54 2005
(704 letters)
>mm_chr11_88872326_88873429
Length = 1104
Score = 775 bits (401), Expect = 0.0
Identities = 482/547 (88%), Gaps = 59/547 (10%)
Strand = Plus / Minus
Query: 161 acagcttggtccacatggcaagttccagaacagccagag---ctacaagtagagagaccc 217
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1104 acagcttggtccacatggcaagttccagaacagccagagctactacaagtagagagaccc 1045
Query: 218 tgcctctaaataaataaataaataaataaataaataaataaataaataaataaacaaata 277
|| ||||||||||||||||||||||||||||
Sbjct: 1044 tgtctctaaataaataaataaataaataaat----------------------------- 1014
Query: 278 aacaaataaacaaataaacaaataaacaaataaataaaatgttcaagggggctatgtggt 337
|||||||||||||||||||||||||||||||||
Sbjct: 1013 ---------------------------aaataaataaaatgttcaagggggctatgtggt 981
Query: 338 agagcacttgcctggtatatgaaggccctaggtttggttggcagtggagcaaaaccaaaa 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 980 agagcacttgcctggtatatgaaggccctaggtttggttggcagtggagcaaaaccaaaa 921
Query: 398 atacaaacaatagaaagggattagctggtgaagaatccccaagcaatgtgtgccagagag 457
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 atacaaacaatagaacgggattagctggtgaagaatccccaagcaatgtgtgccagagag 861
Query: 458 gatatatacaaagggcttgtggcaggaggcatggcacggaaagactgaatggagagaggt 517
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 860 gatatatacaaagggcttgtggcaggaggcatggcacggagagactgaatggagagaggt 801
Query: 518 ggtgggaggtgttgcagggacccagagatgaaaagacagcacctactattgcttgtcagc 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ggtgggaggtgttgcagggacccagagatgaaaagacagcacctactattgcttgtcagc 741
Query: 578 caaggtcaagggtctggcctgccatcttaggataactggaaagttcccgaaggggttacg 637
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 740 caaggtcaagggtctggcctgccattttaggataactggaaagttcccgaaggggttatg 681
Query: 638 agggaaacacggtgacatctatatcctataaaacctccctggctataacagcgggcatgg 697
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 680 agggaaacacggtgacatctatatcctataaaacctccctggctataagagcgggcatgg 621
Query: 698 gggggac 704
|||||||
Sbjct: 620 gggggac 614
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space: 759236
Effective search space used: 759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no481_e21.g1 MSMg01no481_e21.g1 CHROMAT_FILE:
MSMg01no481_e21.g1 PHD_FILE: MSMg01no481_e21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:01:54 2005
(618 letters)
>mm_chr11_88806871_88807890
Length = 1020
Score = 1021 bits (528), Expect = 0.0
Identities = 601/634 (94%), Gaps = 20/634 (3%)
Strand = Plus / Plus
Query: 1 tcaattgggcatcgggaaggatgggtagctgccatgtcctccatgatgaggaaatagaaa 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 191 tcaattgggcatcgggaaggatgggtagctgccatgttctccatgatgaggaaatagaaa 250
Query: 61 ccctgaaagggccagaaatcatgcaaggccacaaaaccggacagaagaatcaagacaggg 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ccccgaaagggccagaaatcatgcaaggccacaaaaccggacagaagaatcaagacaggg 310
Query: 121 acccaggcccctcactccccactcaggctccactcctgcctcatgcttttggtttcagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 acccaggcccctcactccccactcaggctccactcctgcctcatgcttttggtttcagga 370
Query: 181 agtaggagaacaa--gggaag--------tgggggggagtgactctcgtgccatagccgc 230
||||||||||||| |||| | |||||||| |||||| | ||| |||| ||||
Sbjct: 371 agtaggagaacaagggggatggggggggatggggggg-gtgacttttgtgtcatatccgc 429
Query: 231 aggattagaacaacttcaggccaagagacaataccacagaagggcaagacggtttagcac 290
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 430 aagattagaacaacttcaggccaagagacaataccacagaagggtaagacggtttagcac 489
Query: 291 cggatgagaggaagactagaggagcccatggacacttgagaacattctcagggctgagtg 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cggatgagaggaagactagaggagcccatggacacttgagaacattctcagggctgagtg 549
Query: 351 atcctggaaagggagacgggcataatgtgtgggggaagcccaggctgagctagccagcag 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 550 atcctggaaagggagacgggcataatgtgtgggggaagcccaggctgagctagccagtag 609
Query: 411 catggactcaccaggctgtgaactgagaaaggggttgtttagagaagggagggaggggaa 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 610 catggactcaccaggctgtgaactgagaaaggggttgtttagagaagggagggaggg-aa 668
Query: 471 ggggggacacaaaggactgggaagatatcacaggggaagaggacaagggacttgcaagct 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ggggggacacaaaggactgggaagatatcacaggggaagaggacaagggacttgcaagct 728
Query: 531 tgataaagccctgatgtgaggggtgagg------gaagagaaagaggaaagagtcggaac 584
||||||||||||||| || |||| | || ||||||||||||||| ||||||||||
Sbjct: 729 tgataaagccctgat-tgggggggggggcggggggaagagaaagaggaa-gagtcggaac 786
Query: 585 ttgtagcagatggtgggactcaaggtctgaggtt 618
||||||||||||||||||||||||||||||||||
Sbjct: 787 ttgtagcagatggtgggactcaaggtctgaggtt 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1020
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1010
Effective search space: 614080
Effective search space used: 614080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
