Query= MSMg01no483_h20.b1 MSMg01no483_h20.b1 CHROMAT_FILE:
MSMg01no483_h20.b1 PHD_FILE: MSMg01no483_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:43 2005
(646 letters)
>mm_chr11_121170996_121172041
Length = 1046
Score = 1172 bits (606), Expect = 0.0
Identities = 624/630 (99%)
Strand = Plus / Minus
Query: 17 attctaactctgtctccccagccagcattctctaaaaaggatcacattttagcctctctg 76
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 744 attctaactctgtctccccagccagcattctctaaaaaggatcacattttagcctccctg 685
Query: 77 tacgctacaagtggctcaactggggtcataacagaaaaaggcaacaggaaacaattagac 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tacgctacaagtggctcaactggggtcataacagaaaaaggcaacaggaaacaattagac 625
Query: 137 ccaccagcctgccagtgtcccatcccctgacccccgttttttaaaaaagcaggtctcatg 196
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct: 624 ccaccagcctgccagtgtcccatcccctgacccccattttttaaaaaagcaagtctcatg 565
Query: 197 tagctcagactgactccatgcccatagatttatgatttggttatgtgggtggcctgggac 256
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 tagctcagactgactccatgcccatagatttattatttggttatgtgggtggcctgggac 505
Query: 257 agcagctggaagatgagtgttaccgcctgggaacctcaaagggcgagcggggtgggagtg 316
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 agcagctggaagatgagtgttaccgcctgggaacctcaaagggcgagtggggtgggagtg 445
Query: 317 ggggacaatcacaacttagaacactttataactctaacaacggaatgtcagtaagatgcc 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggggacaatcacaacttagaacactttataactctaacaacggaatgtcagtaagatgcc 385
Query: 377 acacagttgactgtacagccgtagcatcatgaagaccctgtgccttccctcacctctaag 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acacagttgactgtacagccgtagcatcatgaagaccctgtgccttccctcacctctaag 325
Query: 437 ggagcctgtgctgccgcccatctgtgttcctggtccagtctccccagcacaggctaaaaa 496
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 324 ggagcctgtgctgccgcccatctgtgttcctggtccagtctccccagcacaagctaaaaa 265
Query: 497 gtaagatagatgtatctgcttatcagaagacaatgatactctgtattcattaaaattaat 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtaagatagatgtatctgcttatcagaagacaatgatactctgtattcattaaaattaat 205
Query: 557 aaaaatattttattgaatttcaggaacttggtactttttaaaaattccaaatctttgcac 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aaaaatattttattgaatttcaggaacttggtactttttaaaaattccaaatctttgcac 145
Query: 617 acagatcagcactctgcttcctctgagctg 646
||||||||||||||||||||||||||||||
Sbjct: 144 acagatcagcactctgcttcctctgagctg 115
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space: 658896
Effective search space used: 658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_h20.g1 MSMg01no483_h20.g1 CHROMAT_FILE:
MSMg01no483_h20.g1 PHD_FILE: MSMg01no483_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:43 2005
(523 letters)
>mm_chr11_121035436_121036358
Length = 923
Score = 687 bits (355), Expect = 0.0
Identities = 465/533 (87%), Gaps = 54/533 (10%)
Strand = Plus / Plus
Query: 1 tgtgagttcctgccagccttctcaagaataaggatacagccctgagtacctcttgttcta 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagctcctgccagccttctcaagaataaggatacagccctgagtacctcttgttctg 260
Query: 61 cctagtctaggcctcaagaagggatagcaaactagaaa-ctcagatggggctgagtcaga 119
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct: 261 cctagtctaggcctcaagaagggatagcaaactagaaagc-cagatggggctgagtcaga 319
Query: 120 gctgatgtagtctgtgaggctgcagactcttctctgcatgcagagagccacagtgcattg 179
|||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 320 gctgatgtcctctgtgaggctgtagactcttccctgcatgcagagagccacagtgcattg 379
Query: 180 tatagaagggctactgagagcc---------acaaaaggtgctccttaactcttaatggc 230
|||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 380 tatagaagggctactgagagcctcggagagaacaaaaggtgctccttaactcttaatggc 439
Query: 231 ccagacccgctctttcccagttggtgttaacaggaaggaaatgaaagcacagactgctca 290
|||||||| ||| |||||||||| |||||
Sbjct: 440 ccagacccactc-------------------------------aaagcacagattgctct 468
Query: 291 gattaagacccatagaaagccaggcatggcagtgcacgccttgaatcccagcactcggga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gattaagacccatagaaagccaggcatggcagtgcacgccttgaatcccagcactcggga 528
Query: 351 ggcagaggcaggccgacatctctcaattagatgtcagtctgatttacatacccagttcca 410
|||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 529 ggcagaagcaggccgacatctctcaattagaggtcagtctggtttacatacccagttcca 588
Query: 411 caccagtcagagccacacagtgagactgtgagacaagagagagagagagagagacagaga 470
|||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct: 589 caccagtcagagccacacagtgagactgtgagacaagagagagacacagagaga--gaga 646
Query: 471 gagagacagagagagagacacagagacagagagatccacggagagagctaaag 523
|||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 647 gagagacagaga------cacagaga----gagatccacggagagagctaaag 689
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
