Query= MSMg01no483_j23.b1 MSMg01no483_j23.b1 CHROMAT_FILE:
MSMg01no483_j23.b1 PHD_FILE: MSMg01no483_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:53 2005
(244 letters)
>mm_chr11_89900529_89901172
Length = 644
Score = 472 bits (244), Expect = e-138
Identities = 244/244 (100%)
Strand = Plus / Minus
Query: 1 tatatacctagtggctctctgctgatttctacctcagtcatcttgtcagcagagtgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tatatacctagtggctctctgctgatttctacctcagtcatcttgtcagcagagtgataa 300
Query: 61 ggataaaagtgaatgaaatgacagacaggtccataggagaggggcaccgaggaaaacgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ggataaaagtgaatgaaatgacagacaggtccataggagaggggcaccgaggaaaacgtt 240
Query: 121 tctctctgctgatctattcattgacttattctcctgacaccatccccacccccattccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 tctctctgctgatctattcattgacttattctcctgacaccatccccacccccattccca 180
Query: 181 tccccccacccccaccccgcaccttgtgtgcgtaggcttattcatctttggggaagagac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 tccccccacccccaccccgcaccttgtgtgcgtaggcttattcatctttggggaagagac 120
Query: 241 ttcc 244
||||
Sbjct: 119 ttcc 116
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no483_j23.g1 MSMg01no483_j23.g1 CHROMAT_FILE:
MSMg01no483_j23.g1 PHD_FILE: MSMg01no483_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:04:53 2005
(643 letters)
>mm_chr11_89704836_89705878
Length = 1043
Score = 1208 bits (625), Expect = 0.0
Identities = 642/655 (98%), Gaps = 12/655 (1%)
Strand = Plus / Plus
Query: 1 atctgcttaatacaattttgaaagaaaaaaatctcctttagagaaatatattagacttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 atctgcttaatacaattttgaaagaaaaaaatctcctttagagaaatatattagacttaa 248
Query: 61 gcttttcaggaacaaaagtggggaaagacctgtttcctccagggttctggggaaagggtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcttttcaggaacaaaagtggggaaagacctgtttcctccagggttctggggaaagggtg 308
Query: 121 ggcttttagtagggagggttttagctattggtttccttctatagttcagactttatgtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ggcttttagtagggagggttttagctattggtttccttctatagttcagactttatgtaa 368
Query: 181 gttctcaatcctatccatgcaggggctgagtgttagtttcacttgattatggaattcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gttctcaatcctatccatgcaggggctgagtgttagtttcacttgattatggaattcctg 428
Query: 241 tccccatcttctgccattcacaggggtggcctctggttgatgaactaaggccacaacacg 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tccccatctgctgccattcacaggggtggcctctggttgatgaactaaggccacaacacg 488
Query: 301 gctgatgtaaccatgattgtcaatgttcatctctttggtatcacccagcctgttcgctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gctgatgtaaccatgattgtcaatgttcatctctttggtatcacccagcctgttcgctgc 548
Query: 361 tgggtctgcacagaataccctcctctgcttcctgcagtcctttatcctatgctctgtgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tgggtctgcacagaataccctcctctgcttcctgcagtcctttatcctatgctctgtgtc 608
Query: 421 acatctgggtcttgggaagttttccagttgcatctaaaccgtactgaacatcaaggaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 acatctgggtcttgggaagttttccagttgcatctaaaccgtactgaacatcaaggaaac 668
Query: 481 ccgaaggtctctcagcctacatgcatctcattctcttaaaaaaaatcagtcaggg----- 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ccgaaggtctctcagcctacatgcatctcattctcttaaaaaaaatcagtcagggtccaa 728
Query: 536 -------accctctctcgaatgtcacacactcactcgagaccactctctgccactcgtgt 588
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgcagggaccctctctcgaatgtcacacactcactcgagaccactctctgccactcgtgt 788
Query: 589 ctgtggactgataagtctggcatagacctcatttcatcccaggcacaagcagagc 643
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctgtggactgataagtctggcatagacctcatttcatcccaggcacaagcagagc 843
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 643
Length of database: 1043
Length adjustment: 10
Effective length of query: 633
Effective length of database: 1033
Effective search space: 653889
Effective search space used: 653889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
