Query= MSMg01no483_n16.b1 MSMg01no483_n16.b1 CHROMAT_FILE:
MSMg01no483_n16.b1 PHD_FILE: MSMg01no483_n16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:13 2005
(565 letters)
>mm_chr11_43134776_43135738
Length = 963
Score = 594 bits (307), Expect = e-174
Identities = 350/375 (93%), Gaps = 20/375 (5%)
Strand = Plus / Minus
Query: 1 cagtggttgccccaaatgtggagacactatccttccttattgtatatttctcatattcct 60
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 359 cagtggttgccccaaatgtggagacactatccttccttattg--tatttctcatatttct 302
Query: 61 attggctatccttcagatatgccaattttacatacttttaaaacatttgtatatctatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 attggctatccttcagatatgccaattttacatacttttaaaacatttgtatatctatat 242
Query: 121 attacaataacagctctgggtggctagagtaatggctcaaccacacacacacacacacac 180
|||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 241 attacaataacatctctgggtggctagagtaatggctcaac----------cacacacac 192
Query: 181 acacacacacacacacacacacacacactatgtaggattcacaaacagtaaaaaacaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 acacacacacacacacacacacacacactatgtaggattcacaaacagtaaaaaacaatt 132
Query: 241 ttttgaatatattttctaattggtaattttagattacttattaacccattactgcttaat 300
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 131 ttttgaatatattttctaattggtaattttagattacttattaacccgttactgcttaat 72
Query: 301 taagactatttttattttaactttataatattatacctctgcccc----ggcaatcatgt 356
|||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct: 71 taagactatttttattttaactttataatattattcctctg----ttttggtaatcatgt 16
Query: 357 ggcagagtgttccct 371
|||||||||||||||
Sbjct: 15 ggcagagtgttccct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 963
Length adjustment: 10
Effective length of query: 555
Effective length of database: 953
Effective search space: 528915
Effective search space used: 528915
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no483_n16.g1 MSMg01no483_n16.g1 CHROMAT_FILE:
MSMg01no483_n16.g1 PHD_FILE: MSMg01no483_n16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:13 2005
(549 letters)
>mm_chr11_42966417_42967365
Length = 949
Score = 1019 bits (527), Expect = 0.0
Identities = 548/563 (97%), Gaps = 14/563 (2%)
Strand = Plus / Plus
Query: 1 acagtgaaagagatgtttgagttgggtaagagccaataactaggaagaaactggaagagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagtgaaagagatgtttgagttgggtaagagccaataactaggaagaaactggaagagt 260
Query: 61 atatttttctcctccagagtctccactgccactttgcttgtccctctaggtgggccaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatttttctcctccagagtctccactgccactttgcttgtccctctaggtgggccaacc 320
Query: 121 tctacttcctgttcctggtgattctgaactggatgccctccatggaagtcttccacaggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctacttcctgttcctggtgattctgaactggatgccctccatggaagtcttccacaggg 380
Query: 181 aaatcaccatgtttccactggccactgtcctgttgatcatcatggtcaaagatggcatag 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatcaccatatttccactggccactgtcctgttgatcatcatggtcaaagatggcatag 440
Query: 241 aggacttcaagagatattgctttgacagggagatgaatagtgccagcattcaaatatatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggacttcaagagatattgctttgacagggagatgaatagtgccagcattcaaatatatg 500
Query: 301 aaaggtaagggactctacaactgtttcctctattgcagaaggttaaataaattcaccagc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaggtaagggactctacaactgtttcctctattgcagaaggttaaataaattcaccagc 560
Query: 361 atatttaacgggctgatctttcctagcactgtggcttttaagctttctttcttttctttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atatttaacgggctgatctttcctagcactgtggcttttaagctttctttcttttctttc 620
Query: 421 tttctttctttctctctttctttctttcttccttccttccttccttcctt--------tc 472
|||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tttctttctttctctctttctttctttcttccttccttccttccttccttcctttctttc 680
Query: 473 tttctttctttctttatgtttgtgtgtgtgtgtgtgtgtgtgtgtg------cgtgtaca 526
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 681 tttctttctttctttatgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtaca 740
Query: 527 tgccaaaacaaacatatggaggc 549
|||||||||||||||||||||||
Sbjct: 741 tgccaaaacaaacatatggaggc 763
Score = 56.8 bits (29), Expect = 4e-12
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 491 tttgtgtgtgtgtgtgtgtgtgtgtgtgcgtgt 523
|||||||||||||||||||||||||||| ||||
Sbjct: 109 tttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 77
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
