MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-484B02
Chromosome	11 (Build37)
Map Location	29,595,851 - 29,596,445
singlet/doublet	singlet
Overlap gene	Rtn4
Upstream gene	Efemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
Downstream gene	C230094A16Rik, 4931440F15Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452
Link	Open Mouse BAC browser

Click to get alignment info.

name	Efemp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216616 MGI:1339998
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC382504 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:382504
definition	note : laminin receptor 1 pseudogene pseudo : _no_value

name	Pnpt1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71701 MGI:1918951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A630052C17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320757 MGI:2444673
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 20 ESTs

name	Smek2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104570 MGI:2144474
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042972 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042972
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs

name	Ccdc104 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216618 MGI:1913994
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC672637 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:672637
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	LOC100042985 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042985
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	A430106J12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:108686 MGI:1925177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2010316F05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67939 MGI:1915189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042990 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042990
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs

name	Mtif2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76784 MGI:1924034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rps27a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78294 MGI:1925544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	1700034F02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73324 MGI:1920574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 4 Proteins

name	LOC628830 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 41 ESTs, 5 Proteins pseudo : _no_value

name	LOC666403 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666403
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 120 ESTs, 8 Proteins pseudo : _no_value

name	Rtn4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68585 MGI:1915835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 5 mRNAs

name	C230094A16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237711 MGI:2442895
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4931440F15Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:216622 MGI:2441689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spnb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20742 MGI:98388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	EG666427 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666427 MGI:3645749
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC666432 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666432
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	4930505A04Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75087 MGI:1922337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 1 Protein

name	Acyp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75572 MGI:1922822
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC654445 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:654445
definition	gene_synonym : Rbm8 note : RNA binding motif protein pseudogene pseudo : _no_value

name	LOC666452 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666452
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 52 ESTs, 3 Proteins pseudo : _no_value

name	Efemp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:22122482 GeneID:216616 MGI:1339998
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : epidermal growth factor-containing fibulin-like extracellular matrix protein 1 transcript_id : NM_146015.1

name	Pnpt1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:25188203 GeneID:71701 MGI:1918951
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : polyribonucleotide nucleotidyltransferase 1 transcript_id : NM_027869.1

name	Smek2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527251 GeneID:104570 MGI:2144474
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SMEK homolog 2, suppressor of mek1 (Dictyostelium) transcript_id : NM_134034.1

name	LOC100042972 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261688 GeneID:100042972
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 ESTs product : hypothetical protein LOC100042972 transcript_id : XM_001479721.1

name	Ccdc104 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802234 GeneID:216618 MGI:1913994
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 104 transcript_id : NM_025740.2

name	LOC100042985 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261690 GeneID:100042985
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : hypothetical protein LOC100042985 transcript_id : XM_001479743.1

name	A430106J12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:63025207 GeneID:108686 MGI:1925177
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A430106J12 gene transcript_id : NM_176841.3

name	2010316F05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353003 GeneID:67939 MGI:1915189
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2010316F05 gene transcript_id : NM_026465.2

name	LOC100042990 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261692 GeneID:100042990
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs product : hypothetical protein LOC100042990 transcript_id : XM_001479750.1

name	Mtif2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625865 GeneID:76784 MGI:1924034
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : mitochondrial translational initiation factor 2 transcript_id : NM_133767.2

name	Rps27a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76443692 GeneID:78294 MGI:1925544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S27a transcript_id : NM_024277.2

name	Rps27a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76443693 GeneID:78294 MGI:1925544
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein S27a transcript_id : NM_001033865.1

name	1700034F02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94389925 GeneID:73324 MGI:1920574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs, 3 Proteins product : RIKEN cDNA 1700034F02 gene, transcript variant 1 transcript_id : XM_125968.3

name	1700034F02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94389926 GeneID:73324 MGI:1920574
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 ESTs, 2 Proteins product : RIKEN cDNA 1700034F02 gene, transcript variant 3 transcript_id : XM_901828.2

name	Rtn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802887 GeneID:68585 MGI:1915835
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 4 transcript_id : NM_194054.2

name	Rtn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368929 GeneID:68585 MGI:1915835
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 4 transcript_id : NM_194053.2

name	Rtn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377618 GeneID:68585 MGI:1915835
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 4 transcript_id : NM_194052.2

name	Rtn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351890 GeneID:68585 MGI:1915835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 4 transcript_id : NM_194051.2

name	Rtn4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374254 GeneID:68585 MGI:1915835
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : reticulon 4 transcript_id : NM_024226.3

name	C230094A16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:127140885 GeneID:237711 MGI:2442895
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C230094A16 gene transcript_id : NM_146016.2

name	4931440F15Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377548 GeneID:216622 MGI:2441689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4931440F15 gene transcript_id : NM_176829.2

name	Spnb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117938331 GeneID:20742 MGI:98388
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spectrin beta 2 transcript_id : NM_175836.2

name	Spnb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117938333 GeneID:20742 MGI:98388
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spectrin beta 2 transcript_id : NM_009260.2

name	EG666427 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261653 GeneID:666427 MGI:3645749
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG666427 transcript_id : XM_983762.2

name	Acyp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376484 GeneID:75572 MGI:1922822
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acylphosphatase 2, muscle type transcript_id : NM_029344.2

name	Efemp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:22122483 GeneID:216616 MGI:1339998
definition	GO_function : GO:0005509 - calcium ion binding [Evidence IEA] codon_start : 1 product : epidermal growth factor-containing fibulin-like extracellular matrix protein 1 protein_id : NP_666127.1

name	Pnpt1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:25188204 CCDS:CCDS24490.1 GeneID:71701 MGI:1918951
definition	EC_number : 2.7.7.8 GO_function : GO:0000175 - 3'-5'-exoribonuclease activity [Evidence IEA]; GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]; GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0005975 - carbohydrate metabolism [Evidence IEA]; GO:0006402 - mRNA catabolism [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 function : exoribonuclease note : polynucleotide phosphorylase; 3'-5' RNA exonuclease product : polyribonucleotide nucleotidyltransferase 1 protein_id : NP_082145.1

name	Smek2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527252 CCDS:CCDS24492.1 GeneID:104570 MGI:2144474
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 exception : mismatches in translation product : SMEK homolog 2, suppressor of mek1 protein_id : NP_598795.1

name	LOC100042972 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261689 GeneID:100042972
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479771.1

name	Ccdc104 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30352008 CCDS:CCDS24493.1 GeneID:216618 MGI:1913994
definition	codon_start : 1 product : coiled-coil domain containing 104 protein_id : NP_080016.1

name	LOC100042985 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261691 GeneID:100042985
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479793.1

name	A430106J12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:63025208 CCDS:CCDS24494.1 GeneID:108686 MGI:1925177
definition	codon_start : 1 note : Akt-phosphorylation enhancer product : Hook-related protein 1 protein_id : NP_789811.2

name	2010316F05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312706 CCDS:CCDS24495.1 GeneID:67939 MGI:1915189
definition	codon_start : 1 product : hypothetical protein LOC67939 protein_id : NP_080741.1

name	LOC100042990 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261693 GeneID:100042990
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479800.1

name	Mtif2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625866 CCDS:CCDS24496.1 GeneID:76784 MGI:1924034
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003746 - translation elongation factor activity [Evidence IEA]; GO:0003743 - translation initiation factor activity [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0006413 - translational initiation [Evidence IEA] codon_start : 1 product : mitochondrial translational initiation factor 2 protein_id : NP_598528.2

name	Rps27a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:76443694 CCDS:CCDS24497.1 GeneID:78294 MGI:1925544
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA] codon_start : 1 product : ribosomal protein S27a protein_id : NP_001029037.1

name	Rps27a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13195690 CCDS:CCDS24497.1 GeneID:78294 MGI:1925544
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006464 - protein modification [Evidence IEA] codon_start : 1 product : ribosomal protein S27a protein_id : NP_077239.1

name	1700034F02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20857107 GeneID:73324 MGI:1920574
definition	codon_start : 1 product : hypothetical protein LOC73324 isoform 1 protein_id : XP_125968.1

name	1700034F02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82933767 GeneID:73324 MGI:1920574
definition	codon_start : 1 product : hypothetical protein LOC73324 isoform 3 protein_id : XP_906921.1

name	Rtn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610235 CCDS:CCDS24501.1 GeneID:68585 MGI:1915835
definition	GO_component : GO:0042995 - cell projection [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA]; GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0030176 - integral to endoplasmic reticulum membrane [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0019987 - negative regulation of anti-apoptosis [Evidence ISS]; GO:0030517 - negative regulation of axon extension [Evidence ISS]; GO:0007399 - nervous system development [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence ISS] codon_start : 1 note : isoform A is encoded by transcript variant 1 product : reticulon 4 isoform A protein_id : NP_918943.1

name	Rtn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610241 CCDS:CCDS24500.1 GeneID:68585 MGI:1915835
definition	GO_component : GO:0042995 - cell projection [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA]; GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0030176 - integral to endoplasmic reticulum membrane [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0019987 - negative regulation of anti-apoptosis [Evidence ISS]; GO:0030517 - negative regulation of axon extension [Evidence ISS]; GO:0007399 - nervous system development [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence ISS] codon_start : 1 note : isoform B2 is encoded by transcript variant 3 product : reticulon 4 isoform B2 protein_id : NP_918942.1

name	Rtn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610233 CCDS:CCDS24499.1 GeneID:68585 MGI:1915835
definition	GO_component : GO:0042995 - cell projection [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA]; GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0030176 - integral to endoplasmic reticulum membrane [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0019987 - negative regulation of anti-apoptosis [Evidence ISS]; GO:0030517 - negative regulation of axon extension [Evidence ISS]; GO:0007399 - nervous system development [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence ISS] codon_start : 1 note : isoform B1 is encoded by transcript variant 2 product : reticulon 4 isoform B1 protein_id : NP_918941.1

name	Rtn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34610237 CCDS:CCDS24502.1 GeneID:68585 MGI:1915835
definition	GO_component : GO:0042995 - cell projection [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA]; GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0030176 - integral to endoplasmic reticulum membrane [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0019987 - negative regulation of anti-apoptosis [Evidence ISS]; GO:0030517 - negative regulation of axon extension [Evidence ISS]; GO:0007399 - nervous system development [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence ISS] codon_start : 1 note : isoform D is encoded by transcript variant 5 product : reticulon 4 isoform D protein_id : NP_918940.1

name	Rtn4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13195648 CCDS:CCDS24503.1 GeneID:68585 MGI:1915835
definition	GO_component : GO:0042995 - cell projection [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA]; GO:0005783 - endoplasmic reticulum [Evidence IDA]; GO:0030176 - integral to endoplasmic reticulum membrane [Evidence ISS]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005635 - nuclear envelope [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0001525 - angiogenesis [Evidence IMP]; GO:0019987 - negative regulation of anti-apoptosis [Evidence ISS]; GO:0030517 - negative regulation of axon extension [Evidence ISS]; GO:0007399 - nervous system development [Evidence IDA]; GO:0030334 - regulation of cell migration [Evidence ISS] codon_start : 1 note : isoform C is encoded by transcript variant 4 product : reticulon 4 isoform C protein_id : NP_077188.1

name	C230094A16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:127140886 CCDS:CCDS24504.1 GeneID:237711 MGI:2442895
definition	codon_start : 1 product : hypothetical protein LOC237711 protein_id : NP_666128.2

name	4931440F15Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34850070 GeneID:216622 MGI:2441689
definition	codon_start : 1 note : Fem1a-like product : hypothetical protein LOC216622 protein_id : NP_789799.1

name	Spnb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117938332 GeneID:20742 MGI:98388
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0051016 - barbed-end actin filament capping [Evidence IEA]; GO:0007182 - common-partner SMAD protein phosphorylation [Evidence IDA]; GO:0006306 - DNA methylation [Evidence IEA]; GO:0007184 - SMAD protein nuclear translocation [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; beta-spectrin 2, non-erythrocytic; beta fodrin; spectrin G; brain spectrin product : spectrin beta 2 isoform 1 protein_id : NP_787030.2

name	Spnb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117938334 CCDS:CCDS24506.1 GeneID:20742 MGI:98388
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005516 - calmodulin binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0051016 - barbed-end actin filament capping [Evidence IEA]; GO:0007182 - common-partner SMAD protein phosphorylation [Evidence IDA]; GO:0006306 - DNA methylation [Evidence IEA]; GO:0007184 - SMAD protein nuclear translocation [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; beta-spectrin 2, non-erythrocytic; beta fodrin; spectrin G; brain spectrin product : spectrin beta 2 isoform 2 protein_id : NP_033286.2

name	EG666427 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261654 GeneID:666427 MGI:3645749
definition	codon_start : 1 product : hypothetical protein protein_id : XP_988856.2

name	Acyp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229219 CCDS:CCDS24507.1 GeneID:75572 MGI:1922822
definition	GO_function : GO:0003998 - acylphosphatase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 product : acylphosphatase 2, muscle type protein_id : NP_083620.1

name	LOC672637 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672637
definition	number : 5 pseudo : _no_value

name	LOC672637 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672637
definition	number : 4 pseudo : _no_value

name	LOC672637 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672637
definition	number : 3 pseudo : _no_value

name	LOC672637 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672637
definition	number : 2 pseudo : _no_value

name	LOC672637 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:672637
definition	number : 1 pseudo : _no_value

name	LOC666432 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666432
definition	number : 1 pseudo : _no_value

name	LOC666432 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666432
definition	number : 2 pseudo : _no_value

name	LOC666432 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666432
definition	number : 3 pseudo : _no_value

name	LOC666432 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666432
definition	number : 4 pseudo : _no_value

name	A630052C17Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261687 GeneID:320757 MGI:2444673
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 mRNAs, 20 ESTs product : RIKEN cDNA A630052C17 gene transcript_id : XR_035410.1

name	LOC628830 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261652 GeneID:628830
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 41 ESTs, 5 Proteins product : similar to ribosomal protein pseudo : _no_value transcript_id : XR_033571.1

name	LOC666403 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261694 GeneID:666403
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 120 ESTs, 8 Proteins product : similar to ribosomal protein S2 pseudo : _no_value transcript_id : XR_034389.1

name	4930505A04Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149261695 GeneID:75087 MGI:1922337
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs, 1 Protein product : RIKEN cDNA 4930505A04 gene transcript_id : XR_001571.2

name	LOC666452 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:94389939 GeneID:666452
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 52 ESTs, 3 Proteins product : hypothetical LOC666452 pseudo : _no_value transcript_id : XR_001874.1

clone name	MSMg01-146I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193N14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417K15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-528D19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-091H15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094N24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292H13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141K22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143F13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-428A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-214E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-448M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-449J04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-516F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270C01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-117F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-536L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359I09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362C05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417I20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-364F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-512F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-366L23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114E08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-273F17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-083M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080N22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-469K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-113J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-112C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-546I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-418F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-322N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-392K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-387B02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-521M04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138D04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-128H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-098L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115O16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-430I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119C16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-097P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010E18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-013F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-090P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237C02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251O05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-113F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039A11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-179E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167P05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068G12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079C12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-144D23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-019D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031C01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-235G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-072J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-293P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-015D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347N24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003K09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-298G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173L06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-258H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-086G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-219E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-283O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220D23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255G20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131P23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-212A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226F12
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-484B02.T7 (MSMg01no484_b02.b1)	MSMg01-484B02.TJ (MSMg01no484_b02.g1)
ACC	AG563845	AG563846
length	735	727
length of high quality (start - end)	646 (76 - 721)	522 (87 - 608)
definition	CHROMAT_FILE: MSMg01no484_b02.b1 PHD_FILE: MSMg01no484_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:29 2005	CHROMAT_FILE: MSMg01no484_b02.g1 PHD_FILE: MSMg01no484_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:05:29 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NNNTTACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGAT GNGNGGAATTNNAGTTATTCTCTCACACATTTTCAGTCACATTACCAATG TGTCTAAAGATCAGCTTAGTCATCTTAACTGATGTCTGCACTTTCCTCAA ATCAATCTCTAAGTTTCCTTAGAACAAATGAACCATTCTTTCTAGAAAAA TGGTCATCAAGTAAAAGGAACAGGTCTCAGTACATTACAATGGAGATACT ACAATTCAGGAAAACTATAACTTACTAACTGAAGGATATCAGAGTTAAGG AAAAAAACTAATGTAAATAGCAGTGTTAAACACAGTTGCTAGGGGTTTAT ATATAGCCTCTCCCAGTTTGTCTATTCTAACCATGGACAGAGTGCTTTCA CCTTTGTCTTTATTCTAATCATCTATAAACCTTCAAAGCTACATTTTTGC TCCAAAATCACAATGTAATTATTCAAGTAGCATATTCCTAAAATACTATT TCTTTAAGCCATACTTTTTACCGTGACCCCAGAGGCTCCTAATTACCTGA CTCTGCATAAGTTTTCCTTAATAATCTTAGTTAATAAACAAGCTCACTCC TGCTTCAGGGTCTTTGCCCTAGGAATTCCTTTATATATTTTTTTTTTCTC TGCAGCTCACACCTTAGTTCTTTTTCCTATCATCAAGCAACCTTGAAAAG GGTCCTCATGGGGCTGGAGAGATGGCCCAGCGGTT	TCTTCTTCCTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTTTTTTGTT TTGTTTGTTTGTTTGTTTGTTTGTTTTGGTTTGTTTTTCAAGATGGGGGT TTTTCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTAGCCTCGAACT CAGAAATCCTCCTGCCTCTGCCTCCCAGGTGCTGAGATTAAAGGCATGTG CCACCACTGCCCAACAGGGAGGAGTTCTTTTTTTTTTTCCAATTTGCCAA GCTGTGACTGTTTATTAACTGACCAGATTACAAAAATACCATGGCTGACA CCTTAGTTCATCCGTCTAATAAGCCTGTTTATCTGGTCTTCCCTGTTGCC AGCATCTCCGTCTTCTACAAAGTGAGTTATCTTTTTCTTCATTCCACCTC GTGGGGAAGATAATTTGAAGGGCCACAGGAAGTTATTTGCGTTCTTGAAG CATTTCCCAATTGTATAGATCTCATGAATTAGATCCTCCATGCAGATGAT GCCAAACTTACCAGGAGATAGCGCAATCAAGGAATTATCTTTTTTTTTTT TTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCTGGGCTGTCCT GGAACCCACTTTGTAAAACAGGCTGGCCTCGAATTCAAAAATCTGTCTGT CTCTGCCTCCCAAGTGGTGGAATCAAA
quality values	Open. Hide. 0 0 0 3 6 6 6 11 12 9 9 9 9 9 12 25 25 37 37 37 37 37 30 21 19 8 8 8 21 21 39 27 24 25 19 19 8 10 10 17 15 9 9 9 11 11 15 10 8 6 3 0 3 0 3 21 21 21 21 3 0 0 3 17 18 9 9 9 8 8 8 8 8 17 15 23 28 26 26 33 33 28 35 35 35 35 35 53 57 50 53 53 53 40 40 50 50 50 50 59 59 57 57 57 57 57 59 54 48 48 48 48 50 50 50 57 59 44 44 37 32 32 37 44 44 59 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 68 57 57 57 57 57 57 68 68 68 68 68 68 57 57 57 57 57 59 59 59 59 57 57 57 59 59 43 43 57 44 57 54 52 57 52 52 52 57 57 57 57 57 57 57 57 59 57 57 59 57 57 59 57 68 68 57 57 57 57 57 57 57 59 57 59 59 68 68 68 68 59 59 57 57 57 57 57 57 57 57 57 57 57 52 59 57 57 57 57 68 68 68 68 68 68 68 68 68 57 62 52 62 62 62 62 62 62 62 62 62 62 62 52 62 52 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 52 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 62 62 62 52 52 57 57 57 57 57 57 52 52 57 57 68 68 68 59 59 52 57 45 52 57 57 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 57 57 52 52 52 43 59 68 68 68 59 59 59 59 57 57 57 57 57 68 59 59 57 57 59 57 57 57 59 57 57 57 57 57 57 57 57 59 57 57 57 59 59 68 68 68 57 57 57 57 57 43 43 37 50 42 57 44 42 37 42 39 44 37 44 42 46 44 47 59 59 59 59 57 57 57 57 57 57 57 48 44 44 59 57 57 57 59 54 54 54 47 59 46 48 48 57 46 54 54 57 48 57 43 48 47 59 42 48 48 57 57 48 48 48 57 57 57 57 50 39 39 39 39 43 43 43 48 48 47 47 47 41 39 39 32 25 25 28 29 31 33 41 59 47 47 47 34 34 25 22 22 34 34 39 47 47 47 47 47 43 37 37 39 43 39 43 43 59 59 59 59 59 59 59 43 40 40 40 39 34 37 30 28 28 15 15 6 7 7 9 18 34 34 28 23 20 23 34 31 37 41 41 41 37 32 41 39 41 41 37 37 32 29 30 37 41 41 41 37 37 39 39 35 32 36 36 36 31 29 34 30 25 29 36 41 41 37 34 36 43 41 41 41 32 32 14 14 12 16 16 24 19 19 22 17 22 14 14 23 28 28 22 22	Open. Hide. 9 9 9 21 21 19 10 9 9 9 9 9 9 10 8 9 9 9 9 12 28 35 37 37 37 31 31 43 37 37 33 33 33 33 41 37 50 47 37 33 21 19 9 9 9 9 10 9 9 11 14 14 30 30 37 30 30 33 36 36 36 36 36 36 33 59 59 59 47 27 25 10 9 9 9 9 9 11 15 23 19 31 31 31 33 36 59 59 57 57 57 57 57 59 59 53 53 53 50 50 53 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 57 50 50 48 48 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 59 59 57 54 59 57 57 50 51 50 50 57 57 57 59 57 59 59 59 59 68 57 57 57 57 57 57 57 57 57 57 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 59 59 57 57 57 68 68 68 68 68 68 59 59 59 59 59 57 57 62 62 62 62 62 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 62 68 68 68 62 62 62 62 62 62 52 52 52 62 62 62 62 62 62 62 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 62 68 68 62 62 62 62 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 52 57 57 59 59 59 59 57 59 59 59 59 59 57 57 57 57 57 57 57 57 57 57 57 57 59 57 57 54 57 57 59 59 59 59 59 54 54 54 59 57 57 57 57 57 57 59 59 57 54 54 57 54 57 57 57 57 57 57 68 68 68 68 68 57 57 57 54 54 57 59 59 59 59 59 48 48 48 48 57 57 68 57 57 54 54 54 57 59 47 47 47 57 57 44 44 30 30 30 44 44 68 59 68 68 53 50 48 34 31 37 30 47 39 39 35 39 32 37 30 37 40 43 42 47 48 48 43 43 43 43 43 57 57 59 59 43 43 39 35 32 30 32 32 36 37 33 33 33 32 27 28 28 35 32 32 30 32 37 37 37 37 37 37 36 36 36 43 59 59 59 57 57 57 57 57 57 59 59 47 37 32 21 18 14 12 12 16 16 19 20 22 22 16 17 14 14 10 12 10 8 9 15 13 43 43 59 43 39 31 22 24 14 19 19 22 22 21 14 16 14 12 9 9 12 12 28 22 19 21 15 14 14 14 15 15 30 28 17 11 11 15 17 11 11 11 11 18 20 15 14 26 19 18 18 12 11 11 11 11 11 15 24 19 25 32 37 37 30 15 10 6 6 8 10 8 9 10 12 15 16 23 15 11 10 8 8 12 11 10 11 8 8 8 8 8 12 13 12 11 12 10 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no484_b02.b1 MSMg01no484_b02.b1 CHROMAT_FILE:
MSMg01no484_b02.b1 PHD_FILE: MSMg01no484_b02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:05:29 2005
         (646 letters)



>mm_chr11_29595600_29596645
          Length = 1046

 Score = 1065 bits (551), Expect = 0.0
 Identities = 584/595 (98%)
 Strand = Plus / Minus

                                                                       
Query: 52  aactgatgtctgcactttcctcaaatcaatctctaagtttccttagaacaaatgaaccat 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 aactgatgtctgcactttcctcaaatcaatctctaagtttccttagaacaaatgaaccat 787

                                                                       
Query: 112 tctttctagaaaaatggtcatcaagtaaaaggaacaggtctcagtacattacaatggaga 171
           |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 786 tctttctagaaaaatggtcatcaagtaaaaggtacaggtctcaatacattacaatggaga 727

                                                                       
Query: 172 tactacaattcaggaaaactataacttactaactgaaggatatcagagttaaggaaaaaa 231
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tactgcaattcaggaaaactataacttactaactgaaggatatcagagttaaggaaaaaa 667

                                                                       
Query: 232 actaatgtaaatagcagtgttaaacacagttgctaggggtttatatatagcctctcccag 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 actaatgtaaatagcagtgttaaacacagttgctaggggtttatatatagcctctcccag 607

                                                                       
Query: 292 tttgtctattctaaccatggacagagtgctttcacctttgtctttattctaatcatctat 351
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 606 tttgtctattctaaccatggacagagtgctttcacctttgtctttattataatcatctat 547

                                                                       
Query: 352 aaaccttcaaagctacatttttgctccaaaatcacaatgtaattattcaagtagcatatt 411
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aaaccttcaaaactacatttttgctccaaaatcacaatgtaattattcaagtagcatatt 487

                                                                       
Query: 412 cctaaaatactatttctttaagccatactttttaccgtgaccccagaggctcctaattac 471
           ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 486 cctaaaatactatttctgtaagccatacttattaccgtgaccccagaggctcctaactac 427

                                                                       
Query: 472 ctgactctgcataagttttccttaataatcttagttaataaacaagctcactcctgcttc 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctgactctgcataagttttccttaataatcttagttaataaacaagctcactcctgcttc 367

                                                                       
Query: 532 agggtctttgccctaggaattcctttatatattttttttttctctgcagctcacacctta 591
           |||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||||
Sbjct: 366 agggtctttgccctaggaattcctttatatatatattttttctctgcagctcaaacctta 307

                                                                  
Query: 592 gttctttttcctatcatcaagcaaccttgaaaagggtcctcatggggctggagag 646
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gttctttttcctatcatcaagcaaccttgaaaagggtcctcatggggctggagag 252


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information