BAC Information

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BAC

Clone NameMSMg01-484J12
Chromosome11 (Build37)
Map Location 15,305,683 - 15,306,102
singlet/doubletsinglet
Overlap genenone
Upstream gene1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream geneLOC665660, Vstm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484J12.T7 (MSMg01no484_j12.b1)MSMg01-484J12.TJ (MSMg01no484_j12.g1)
ACCAG564243AG564244
length750860
length of high quality
(start - end)
400 (326 - 725)103 (77 - 179)
definitionCHROMAT_FILE: MSMg01no484_j12.b1 PHD_FILE: MSMg01no484_j12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:13 2005CHROMAT_FILE: MSMg01no484_j12.g1 PHD_FILE: MSMg01no484_j12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCATACGAAGCCGCG
GAATTCTTCAAATTCTTAAACCCCAGCAATTTTTCTTCCTGAAAATTGGT
CATGTATTCACTCATTTTTTACCGTATTTCCTCAAATTTAGAAGTCAGAC
AAAATGGAACCCATGTCCCTGTGACATACTAGATCATGCTGAGCTGGGCT
CCTTTGCTGAGCTGTGCTGCAAGTCTTGGATTTCACCCTAGATTTACAAC
TTTCAATTGTAAATTCACAGTTTTAGTGACAAGAGTAGCAATTGAGAAGT
ACTGAAAAATATCTGATTTTTCNNAATATATATGTGTGTTACTTATTTAC
TAAGACACATGAGTTAAGTTACATAGACACATACATGACAGTCTATTACA
TATCTATCTAAATATATGCCAACTAGGCATATATTACATGCTACATTCTC
TTTTTTAGGACAAATCATCCATTTTTTCAATTTGTATAATTAATTACATT
ATTTTTACACTTCCTTTTTTCCTTCCAGCCCTTCCTATATATTTTGCTTA
ATACCTTTCAAATATGGCTTCCATTTATTTTATTATATATATGCATACAT
ATGTATATACAGTTATTATATACACACACACATATATATATAATATGATA
CTTATCTAAGTATATAGGTATATATACTGTGTGTGTGTTTGTGTGTCTTT
TCCAATATAAAAAACATAATATAAACACAACTTGTTCCATCTGGATAATG

TTTCCCCATGCTGTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTTCTTTAAACGGGGAACAA
AATACTCATGTGAGTTGGGAGGTAGAGGTTAAGGGGGACTTGGGATGAAG
AGAGGATGGTGAGAGGGATAAGGTATGGGCAGGACACTGNCATCATATCC
ATGGCGTTCTCCCCCTCCACCCTTTCCTTTTCCCACCCTTCCTATTGGTC
CCCCCCCCTCTTTTTTCCTCCACTCCCCCTTTGCCCCCTTTACCTCCCCC
CCTCCTATCTCCCCTTCCCGTTTCACCTTTTTTTTTTTTCCCCTCTTCCC
CTTTGTTCGACTCATTCTGCTTTTTTTTTTTTTTTTGCTTCTCTCATCAC
TTTCCCACCCTCCCCCCCCCTTCTCCCCCCGTTTTTCCCCCCCCCCCCCC
CTCTTTTTTCTTTTTTTTTTCCCCTATCCGGCCCCCTTGTCCTTTTCGTT
TTATTCCTCCCCCTCCTCTCCCCTTGTCCTCCCTACCCCTCTGCTTCCTC
TCTGTACCCGCCCCCCTTTCCCCTGCCCCTCATCCTGCCTCCATCCCTTC
CCCCATCTTCTTTCCCTCCCCCTCTTTCTTGGCTCCCCTCCTCTTTTCCC
ATCTCGCCCCCCCCCCCTTTTTGCTTTTCTCTCTCTCCCCCCCCCCCTTT
TCGTTCTCCTCGCCACACCCTCCTCCCCCGCTGTCTTCTCCTCTCTCCCT
CTCCCCCCCTTTTCCCCCCCTCCCCTCCCTTCCCTCCTCCACCAATTTTT
CTCCTCCCCTCCCCCCCCCCCTTCTTTCTTCCCCCTCCCCTCTCTCTGTT
TTCTCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_j12.b1 MSMg01no484_j12.b1 CHROMAT_FILE:
MSMg01no484_j12.b1 PHD_FILE: MSMg01no484_j12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:13 2005
         (400 letters)



>mm_chr11_15305483_15306282
          Length = 800

 Score =  630 bits (326), Expect = 0.0
 Identities = 389/420 (92%), Gaps = 20/420 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatatatgtgtgttacttatttactaagacacatgagttaagttacatagacacataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atatatatgtgtgttacttatttactaagacacatgagttaagttacatagacacataca 260

                                                                       
Query: 61  tgacagtctattacatatctatctaaatatatgccaactaggcatatattacatgctaca 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcagtctattacatatctatctaaatatatgccaactaggcatatattacatgctaca 320

                                                                       
Query: 121 ttctcttttttaggacaaatcatccattttttcaatttgtataattaattacattatttt 180
           |||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||
Sbjct: 321 ttctcttttttaggacaaatcatcaatttttaaaatttgtataattaattacattatttt 380

                                                                       
Query: 181 tacacttccttttttccttccagcccttcctatatattttgcttaatacctttcaaatat 240
           |||||||||| |||||||||||||||||||||| |||||  |||||||||||||||||||
Sbjct: 381 tacacttcctcttttccttccagcccttcctatttatttcacttaatacctttcaaatat 440

                                                                       
Query: 241 ggcttccatttattttattatatatat--------gcatacatatgtatatacagttatt 292
           ||||||||||| |||||||||||||||        ||||||||||| |||||||||||||
Sbjct: 441 ggcttccatttcttttattatatatatatatatatgcatacatatgcatatacagttatt 500

                                                                       
Query: 293 atataca--cacacacatatatat--------ataatatgatacttatctaagtatatag 342
           ||| |||  |||||||||||||||        ||||||||||||||||||||||||||||
Sbjct: 501 atacacatacacacacatatatatttatatatataatatgatacttatctaagtatatag 560

                                                                       
Query: 343 gtatatatactgtgtgtgtgtttgtgtgtcttttccaa-tataaaaaaca-taatataaa 400
           |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct: 561 gtatatatactgtgtgtgtgtttgtgtgtcttttccaaatataaaaaacaataatataaa 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)