BAC Information

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BAC

Clone NameMSMg01-484N03
Chromosome11 (Build37)
Map Location 83,443,799 - 83,444,483
singlet/doubletsinglet
Overlap genenone
Upstream geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6
Downstream geneLOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-484N03.T7 (MSMg01no484_n03.b1)MSMg01-484N03.TJ (MSMg01no484_n03.g1)
ACCAG564416AG564417
length742740
length of high quality
(start - end)		689 (54 - 742)579 (77 - 655)
definitionCHROMAT_FILE: MSMg01no484_n03.b1 PHD_FILE: MSMg01no484_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:31 2005CHROMAT_FILE: MSMg01no484_n03.g1 PHD_FILE: MSMg01no484_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:06:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCCTTTGCGAAAGGATTTAGCAATTCTATTCTGTTCT
GGGAGATACAGCATCCTAGTTTCTGGATGGGAAAAGGAGGCCTAACAGGT
TTTTGACAAGAAGTAGACTATAGACAAATAGTAACACCTAGGTTCTAGCA
GTATGGTAGAACTTGATTTCTGATGGGTTCCAGGTGGCATTTCTCAAGCA
GAAACAGAAGTAATTTGATTGGAAAATTAAATTCCTTGTAGAGAGATGTG
GAGTCTCAAAGCCAAAAATCAAGAAACATGCAAAGAAAGGAAAATACAGA
AATCTAGCCAAAAATGTCCTGGAAAATTTATGCCATTTTCCTTTGTCCTC
TATGAGTGCTGTCTGCATGTACTTCTGCCTGTTTCTCAGGGCCAGGGCAC
AGAGTGGCTAGCTGGCCTTATCTTCTGCATAGCTCCTTAGGTTTTTCCAT
TGTGTCTCTCACTGCCTGCTGCAGAGAGTCCAGCTACTCCTGCTGTTTCT
TAATGACCTCATGGAAGATTCCACAGAGACTGTGAATGGTTATCACATGA
CCAGGAAGCTGTTGGGGCTGAGAGAGGCTCCTTCCCTAGTACCTGGCTCT
CTGTAGTCCTAGGTGCTCAGACCTGGTCTAGGGCCTGCACAGTCCCTGGG
CACTGTGACGATAAGGAGTATCATAAGGAAGCTGGCTTTCCA

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGGCTTCATCTCCCCAGAATGT
ATTAGTGTTATATTGTTGGGGTTCAGGAATCACCACACAAACCCTGTGGA
CATTGGTCTCAGTTCAGCAAGAATTGTTTATTGAACACTCTCCCCAAGAC
TGATCAAACAGGGCCACAAAATGTGGCATCAGCCTGTGTGGTGGATTTGG
TTTAACATTTGTATTATGTTAATTGGGTTTCCCAAAGTGTATGAGATTCT
GCATGTAAGACACTGAGGGTCCTTGTCCCCAGTTGGCTTTGATTGGTAGT
GGCCAATGGCTGGGCAGGGAGACAGAGGCAGATTTGCAGGCAAGGGAACC
GAGAGAAAAAAAGAGAATGGTCATGCCGGGAAAGGAATAAGATCCAGGCT
TGAGAGTGGCAGAGGAGAGAGCATACCAATCATGTAAGAGCCAGAGAAGA
ATGACCCGGGGGGCTCCCCAATTGGGTCTAGGGTAGCAAAGATGGAATAT
ATGTTTTAGTAAGTAATAACTCAGGAGTATGGGGGGCATTAGCAATGTAG
AAGTTTGGGAGTGGCCCAGCCACTGAGCTGATTAAGGCATATTAAATATA
AGGCTGCATGTGTGTCTTTCATTCAGGAGTCCAAAACATTGGGGCGGGGC
AGGTATCAAGGAACTCTTGCTGTCAACACTGGGGAGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no484_n03.b1 MSMg01no484_n03.b1 CHROMAT_FILE:
MSMg01no484_n03.b1 PHD_FILE: MSMg01no484_n03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:06:31 2005
         (689 letters)



>mm_chr11_83443595_83444683
          Length = 1089

 Score = 1309 bits (677), Expect = 0.0
 Identities = 683/685 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctttgcgaaaggatttagcaattctattctgttctgggagatacagcatcct 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctttgagaaaggatttagcaattctattctgttctgggagatacagcatcct 264

                                                                       
Query: 65  agtttctggatgggaaaaggaggcctaacaggtttttgacaagaagtagactatagacaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtttctggatgggaaaaggaggcctaacaggtttttgacaagaagtagactatagacaa 324

                                                                       
Query: 125 atagtaacacctaggttctagcagtatggtagaacttgatttctgatgggttccaggtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atagtaacacctaggttctagcagtatggtagaacttgatttctgatgggttccaggtgg 384

                                                                       
Query: 185 catttctcaagcagaaacagaagtaatttgattggaaaattaaattccttgtagagagat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 catttctcaagcagaaacagaagtaatttgattggaaaattaaattccttgtagagagat 444

                                                                       
Query: 245 gtggagtctcaaagccaaaaatcaagaaacatgcaaagaaaggaaaatacagaaatctag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtggagtctcaaagccaaaaatcaagaaacatgcaaagaaaggaaaatacagaaatctag 504

                                                                       
Query: 305 ccaaaaatgtcctggaaaatttatgccattttcctttgtcctctatgagtgctgtctgca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccaaaaatgtcctggaaaatttatgccattttcctttgtcctctatgagtgctgtctgca 564

                                                                       
Query: 365 tgtacttctgcctgtttctcagggccagggcacagagtggctagctggccttatcttctg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 tgtacttctgcctgtttctcagggccagggcacagagtggctagctggctttatcttctg 624

                                                                       
Query: 425 catagctccttaggtttttccattgtgtctctcactgcctgctgcagagagtccagctac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 catagctccttaggtttttccattgtgtctctcactgcctgctgcagagagtccagctac 684

                                                                       
Query: 485 tcctgctgtttcttaatgacctcatggaagattccacagagactgtgaatggttatcaca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcctgctgtttcttaatgacctcatggaagattccacagagactgtgaatggttatcaca 744

                                                                       
Query: 545 tgaccaggaagctgttggggctgagagaggctccttccctagtacctggctctctgtagt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgaccaggaagctgttggggctgagagaggctccttccctagtacctggctctctgtagt 804

                                                                       
Query: 605 cctaggtgctcagacctggtctagggcctgcacagtccctgggcactgtgacgataagga 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctaggtgctcagacctggtctagggcctgcacagtccctgggcactgtgacgataagga 864

                                    
Query: 665 gtatcataaggaagctggctttcca 689
           |||||||||||||||||||||||||
Sbjct: 865 gtatcataaggaagctggctttcca 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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