Query= MSMg01no486_c17.b1 MSMg01no486_c17.b1 CHROMAT_FILE:
MSMg01no486_c17.b1 PHD_FILE: MSMg01no486_c17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:23 2005
(687 letters)
>mm_chr11_91675896_91676982
Length = 1087
Score = 356 bits (184), Expect = e-102
Identities = 214/224 (95%)
Strand = Plus / Minus
Query: 4 gaattccagcctattgcaagcaaagtacctaatactatttttcacttagcccttggaaag 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaattccagcctagaggaagcaaagtacctaatactatttttcacttagcccttggaaag 368
Query: 64 gtcaaaagagaagtgtgtggttttgggctagtaagttttactttgctgagttttcaaact 123
||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 367 gtcaagagagaagtgtgtcgttttgggctagtaagttttactttgctgtgttttcaaact 308
Query: 124 cagtcagttttctacactaggaatgcatggaactgttccaatgaaaatttttacagggag 183
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 307 cagtcagttttctacactaggaatgcatggaactgttcaaatgaaaaattttacagggag 248
Query: 184 gtatgctgcatggcgaaaattaaaggtcttacatggtttttaag 227
||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 247 gtatgctgcatggtgaaaattaaaggtctgacatggtttttaag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_c17.g1 MSMg01no486_c17.g1 CHROMAT_FILE:
MSMg01no486_c17.g1 PHD_FILE: MSMg01no486_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:24 2005
(620 letters)
>mm_chr11_91521511_91522530
Length = 1020
Score = 1110 bits (574), Expect = 0.0
Identities = 607/620 (97%), Gaps = 4/620 (0%)
Strand = Plus / Plus
Query: 1 tatgtaaacacttggtcaagattgatggtaggatatgtattcctaggaccacagattcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatgtaaacacttggtcaagattgatggtaggatatgtattcctaggaccacagattcag 260
Query: 61 attgaatatggaaagcatagggccaaatttgtatctaggaatcacaacaccagccaaaag 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 attgaatatggaaagcatagggccaaacttgtatctaggaatcacaacaccagccaaaag 320
Query: 121 acttctcttgaattcaagcaaactcatgtagccatctgctaaactaacaagagttgaaag 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 acttctcttgaattcaagcaaactcatgtagccatctgctgaactaacaagagttgaaag 380
Query: 181 caactgaaccttcagggtcatttcttaccaaagttaaacatgaaccaatggtttgtgcat 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caactgaaccttcagagtcatttcttaccaaagttaaacatgaaccaatggtttgtgcat 440
Query: 241 cattgactagaaatgcaacgtttttgtttatttgtttgtttgtttgcttgtttgttttag 300
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 cattgactagaaatgcaacgtttttg----tttgtttgtttgtttgcttgtttgttttag 496
Query: 301 tttactggtgttcattaatagaagcagtggatgaaaaatacatcatgagtcatctaagtg 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tttaccggtgttcattaatagaagcagtggatgaaaaatacatcatgagtcatctaagtg 556
Query: 361 gggtgagaatgtagagagatgaacatgagattgtgggtatgtgggcaagttttatactag 420
||||||||||||||| ||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 557 gggtgagaatgtagatagatgaacatgagattgtgggtatgtgggcaaggttcatactag 616
Query: 421 ttaagtttatgacattgcacaagcaaaggtgacgtaaaatgctttctcaaattcatacat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttaagtttatgacattgcacaagcaaaggtgacgtaaaatgctttctcaaattcatacat 676
Query: 481 acgttacagaagagtttgtaaatagttaccagaatatattcagattaagaataaaaaggc 540
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 677 acgttaccgaagagtttgtaaataattaccagaatatattcagattaagaataaaaaggc 736
Query: 541 atgtagcactgatgaggaaacatccatgtgcaaaattctatcttcagaaagaacatataa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atgtagcactgatgaggaaacatccatgtgcaaaattctatcttcagaaagaacatataa 796
Query: 601 ttattgggttttcttagatg 620
||||||||||||||||||||
Sbjct: 797 ttattgggttttcttagatg 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space: 616100
Effective search space used: 616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
