Query= MSMg01no486_d04.b1 MSMg01no486_d04.b1 CHROMAT_FILE:
MSMg01no486_d04.b1 PHD_FILE: MSMg01no486_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:26 2005
(657 letters)
>mm_chr11_57461953_57463007
Length = 1055
Score = 1199 bits (620), Expect = 0.0
Identities = 645/654 (98%), Gaps = 2/654 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatgatcttacctttctctaccaaacagatgccatgacccagagaagccagtt 63
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ggaattccatgatcccacctttctctaccaaacagatgccatgacccagagaagccagtt 621
Query: 64 ctcttcctggctcagaagtgggaggagctgcacttgggattcctactgtggggtgttgag 123
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 620 ctcttcctggctcagaagtgggaggagctgcacttgggattcctactgt--ggtattgag 563
Query: 124 aaccagctcccaggctctgcaagatgaaaaccaatcctagagttaaaccaagatgtcagg 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 aaccagctcccaggctctgcaagatgaaaaccaatcctagagttaaaccaagatgtcagg 503
Query: 184 ccggctagggagtgggaaagagaaggaagcccaagtttaaacaaaaatggcctcgaggcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccggctagggagtgggaaagagaaggaagcccaagtttaaacaaaaatggcctcgaggcc 443
Query: 244 ggctttctttccttactcaatcttgcgactttcagaagagccagctatgtgaccagcgag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ggctttctttccttactcaatcttgcgactttcagaagagccagctatgtgaccagcgag 383
Query: 304 actccgagcacatgacgttcactttatgaatcaaatgtcctgcctggtggctccaacagg 363
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 382 actccgagcacatgacgttcactttatgaatcaaatgtcccgcctggtggctccaacagg 323
Query: 364 accaggatgaggcaccacagggcaaggcatcagaggactacacaaacccaggtgtgccat 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 accaggatgaggcaccacagggcaaggcatcagaggactacacaaacccaggtgtgccat 263
Query: 424 ctcacagaaaagccactagaaagtctcacggtaacaaagagccaacaggtgctgatctag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctcacagaaaagccactagaaagtctcacggtaacaaagagccaacaggtgctgatctag 203
Query: 484 agaaaggtctcctgtagccaaggttggccttgaactccaattctcttcctgtcacttcct 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 agaaaggtctcctgtagccaaggttggccttgaactccaattctcttcctgtcacttcct 143
Query: 544 gagtactggaattactgatgtgcgccacaggctggttgatgtggctctgaggactggcca 603
|||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||
Sbjct: 142 gagtactggaattactgacgcgcgccacaggctggttgatgtggcgctgaggactggcca 83
Query: 604 caggcaagcactcaatcaactcagctaccttccagaccagcacttatttctacc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 caggcaagcactcaatcaactcagctaccttccagaccagcacttatttctacc 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1055
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1045
Effective search space: 676115
Effective search space used: 676115
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_d04.g1 MSMg01no486_d04.g1 CHROMAT_FILE:
MSMg01no486_d04.g1 PHD_FILE: MSMg01no486_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:26 2005
(548 letters)
>mm_chr11_57320902_57321849
Length = 948
Score = 1009 bits (522), Expect = 0.0
Identities = 544/556 (97%), Gaps = 8/556 (1%)
Strand = Plus / Plus
Query: 1 caaggcatccaagcccccgctgataacgctcttgccctaggaaagccgaaaaattccatt 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 caaggcatccaagcccccactgataacgctcttgccctaggaaagccgaaaaattccatt 252
Query: 61 a--------ttccacaaaattccattacaactaactgacgacacaggaatggctacatag 112
| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 253 aaaacagatttccacaaaattccattacaactaattgacgacacaggaatggctacatag 312
Query: 113 tgtggagctgctgatgcaggcctgcagttctagctactcgggaggctgagggaggagaac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tgtggagctgctgatgcaggcctgcagttctagctactcgggaggctgagggaggagaac 372
Query: 173 gttcaagtatggcaaaggcacatccagtaaactccaggcctgtttgagcaaatggtaagg 232
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 373 gttcaagtatggcaaaggcacatccaggaaactccaggcctgtttgagcaaatggtaagg 432
Query: 233 tgaaaggcagtgggatgtactgctagtttagtggcagtgtatttgtctggcatgtgtgag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaaaggcagtgggatgtactgctagtttagtggcagtgtatttgtctggcatgtgtgag 492
Query: 293 gccttaaactcaatcccagcaccaggaggggaaaaaagcagcagcagacaacaataccaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gccttaaactcaatcccagcaccaggaggggaaaaaagcagcagcagacaacaataccaa 552
Query: 353 gcactaggcagcctgaagagcggctgatgcaagcacacacagctcacccaaatgcacaca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gcactaggcagcctgaagagcggctgatgcaagcacacacagctcacccaaatgcacaca 612
Query: 413 gatagaaccattcgggaaacctgagagtcagtacctgctgcagctgccttacccagaatc 472
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 613 gatagaaccattcgggaaacctgagagtcagtacctgctacagctgccttacccagaatc 672
Query: 473 ttaattagagtttccattgctgtaaggagacacctcatataaaggacaacatttaattgg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ttaattagagtttccattgctgtaaggagacacctcatataaaggacaacatttaattgg 732
Query: 533 ggctggcttataggtt 548
||||||||||||||||
Sbjct: 733 ggctggcttataggtt 748
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space: 504644
Effective search space used: 504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
