BAC Information

Click to search

BAC

Clone NameMSMg01-486I04
Chromosome11 (Build37)
Map Location 70,663,171 - 70,663,686
singlet/doubletsinglet
Overlap geneRabep1
Upstream genePlscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik
Downstream geneLOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-486I04.T7 (MSMg01no486_i04.b1)MSMg01-486I04.TJ (MSMg01no486_i04.g1)
ACCAG565697AG565698
length741709
length of high quality
(start - end)		615 (55 - 669)92 (83 - 174)
definitionCHROMAT_FILE: MSMg01no486_i04.b1 PHD_FILE: MSMg01no486_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:50 2005CHROMAT_FILE: MSMg01no486_i04.g1 PHD_FILE: MSMg01no486_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:08:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTAGACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGA
TCCGCGGAATTCAAGACTAATTTCCGCTACTTAACAAGAGTGTTAAGAGT
CAGAGAGGGGTTGGGTAGAGGACACACAGAGAGACAAGAGTTAGACAAAC
AGACTGATAGGTAGAAACAAAATAGACTCTTTTTAATCTATCAGAAGACA
AATTTAAAACAATAGTCATCCAGAACCTTTAAGGGAGAAATCTACCTTCT
CATATACCCTGGCAGGTATGCAAACTGATATTTTTTTTTTTTAGCCTATC
TTAACCTAGCAGCAGCTTTAACATTTAAATCACTCTGAATATGTCCTTTA
ACTCAGTAGTTTCACAAATATAAAAGCAAGAATACTGGCTTGCAGGCCTG
CAACTCCAACTACTAAGGAGGCTGAGGCAGGAGGATCTTAAATTCAAAGC
CTGCCTGTGCTAGAGTGAGGCCTTGTCTCAAAACTAAACATACAGCTCAG
TGTAATGCTTGTTTAGCATGTCTGAGGTCCCATCAATGGAAGCACAGCCA
GGCAGGGCGTCTAATGCCTGTAACCCAATATTCCAGAGGATAAAACAGGA
AGTCATCATAAATTGGGGGCCAGCTGGACTAGAGTGGGACCCTGTCTCAA
TAATAAAAATAAAAACAGGAACTGGGGGGCTGGTGAGATGGCTCAGTGGA
TAAGAGCACCCGACTGCTCTTCGGAAAGTCCGAAGTTCAAN

ATGGGAGCGATGGCTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGATGTAGAACCCGACT
GTGGAGGGATGACCGCATTTCCATTTCTCAGAAGAGGAAGCAGAACTTGG
ATAGGTTAAGAGCNTGAGGTAACTGGGCAATCTNGAGATTTTCCCCNNNN
NNNNNNNNNNNNNNNNNNNNNNTTCTAGAACAATTCGGGGGAGTTCCTTG
GTTTTTATTTCCTGGGCCCCCCCCTTTGGACATGGAAATTACAAATCTTC
TCTTCTTAAACGGAAGCAAAACCATGCTCAAAACTTTTCCGTCCTCCCCA
GATTTCCGGGGCCTTCGGGGCCCCTTGTTTGTCTCTAAAGGGGGCTCCCC
CGGGGGGAAACCCCCTTGGAAAGGCCCCCTTCTTGTAAGCGGGCTCTGGG
GAAACTTTGTGCTTTTTTCCCCCCAAAACTCTCCCGGGGGGGAAAAAAAG
AAGGGGGGGGGGGCCCTTTTTAGACTCCTCCGCGGTGTGTGAAAAAAAAG
AGGGGGGGGGGGGGAAACAAAAAGNGGGGGGAGTGTTTTGTGTCCTCCCA
AAAAAACACNACACGCAATTCTTTTTTTTGAAAAACAACANACCCCCCCT
TTTTTTTTTTTGGGGGGGGGGGGGGGCCGCTTTTCTCTCTTTGAGGGGGG
TATTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no486_i04.b1 MSMg01no486_i04.b1 CHROMAT_FILE:
MSMg01no486_i04.b1 PHD_FILE: MSMg01no486_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:08:50 2005
         (615 letters)



>mm_chr11_70663171_70664186
          Length = 1016

 Score =  959 bits (496), Expect = 0.0
 Identities = 511/516 (99%), Gaps = 1/516 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcaagactaatttccgctacttaacaagagtgttaagagtcagagaggggttgggt 62
           |||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcaagactaacttaagctacttaacaagagtgttaagagtcagagaggggttgggt 457

                                                                       
Query: 63  agaggacacacagagagacaagagttagacaaacagactgataggtagaaacaaaataga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agaggacacacagagagacaagagttagacaaacagactgataggtagaaacaaaataga 397

                                                                       
Query: 123 ctctttttaatctatcagaagacaaatttaaaacaatagtcatccagaacctttaaggga 182
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 396 ctctttttaatctatcagaagacaaatttaaaacaatagtcatccagagcctttaaggga 337

                                                                       
Query: 183 gaaatctaccttctcatataccctggcaggtatgcaaactgata-ttttttttttttagc 241
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 336 gaaatctaccttctcatataccctggcaggtatgcaaactgatatttttttttttttagc 277

                                                                       
Query: 242 ctatcttaacctagcagcagctttaacatttaaatcactctgaatatgtcctttaactca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctatcttaacctagcagcagctttaacatttaaatcactctgaatatgtcctttaactca 217

                                                                       
Query: 302 gtagtttcacaaatataaaagcaagaatactggcttgcaggcctgcaactccaactacta 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gtagtttcacaaatataaaagcaagaatactggcttgcaggcctgcaactccaactacta 157

                                                                       
Query: 362 aggaggctgaggcaggaggatcttaaattcaaagcctgcctgtgctagagtgaggccttg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aggaggctgaggcaggaggatcttaaattcaaagcctgcctgtgctagagtgaggccttg 97

                                                                       
Query: 422 tctcaaaactaaacatacagctcagtgtaatgcttgtttagcatgtctgaggtcccatca 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  tctcaaaactaaacatacagctcagtgtaatgcttgtttagcatgtctgaggtcccatca 37

                                               
Query: 482 atggaagcacagccaggcagggcgtctaatgcctgt 517
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  atggaagcacagccaggcagggcgtctaatgcctgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1016
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1006
Effective search space:   608630
Effective search space used:   608630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |