BAC Information

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BAC

Clone NameMSMg01-487B17
Chromosome11 (Build37)
Map Location 91,313,819 - 91,468,477
singlet/doubletdoublet
Overlap geneKif2b
Upstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903, EG664976
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487B17.T7 (MSMg01no487_b17.b1)MSMg01-487B17.TJ (MSMg01no487_b17.g1)
ACCAG566149AG566150
length746756
length of high quality
(start - end)		620 (54 - 673)675 (77 - 751)
definitionCHROMAT_FILE: MSMg01no487_b17.b1 PHD_FILE: MSMg01no487_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:37 2005CHROMAT_FILE: MSMg01no487_b17.g1 PHD_FILE: MSMg01no487_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,467,862 - 91,468,477)(91,313,819 - 91,314,493)
sequence
NNNAAAAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTAGTGTCTAGACTTGTGTTTTGCAGAAAAATGTAA
ACTTGTTTCCTACCAAAAGCTTTCTTATTTTCTTCTAATGAGAATTATTA
TCTGGCAGATAATCAGTGTTGAAACATTGACAGGGCACTTACAATGAAGA
AAATCCCAGCCAACACTATTTAAAGTCCATCTGAAGAGTTGTCTCTGAAG
AGCAGAAAACAGGATGATTGATGGCAATTTGTGAGAGGGCATGCTCAAAC
TTTTTATTGGGTCAGCTTGCCTTTAGGCAGAAGGGCTTGAAAATGACAAC
ACACTCAGTTCTCTTCTTGATATCAGTGTAGTGGAGGAAACCCATGCAAT
GGCAGAGCATGGCTCTATGCTGAGAATGAGTAGATAAGTGTATCATTAGG
ATACATTATAGGGCAGGAAAGAGAGCCAGTGAAAGCTAGAATGCACAAGG
GATTATGGTATAATAAATACAGCCCTTACTCCAACTTCCTGGTCAGAACC
TTGAAAACATTTATACTTTCTAAAGTGACAAATGGGAAACAGTACTTTTA
TTTCTTTGTTTCTCAGAAGAAGGGCCTGCGTATCTTAGTTGAGTTTGTGT
TAAGAATGTGACTTTTGTGAAGACCCCGTAGATGGGGAGTTGGCTGCCAA
TGAAACCAACCAGATGGTTATTATAGAGTGGAGAATTTTTACTTCC

CCATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTGTCTCCTACATTCATCACCTT
CCCTGTAAACACATTTCTATTATGTACTCTTAATTTCTTAATATTTTATT
TTTTTGAAAATTTTCTCATGCTCTCATATCACTATTTCAACAAACACCGG
CCCCTCTTATGTGCTTGTTTCTTCATAAAATATTGTGAACAGAGAGATTA
AAAATAATGGTCTGTGTCTCCTTGTCTCAAAATTTATATATTCTGGTGAA
GAATTCAATCTCAGACAATCCTAAATCATGAGAGTTTTATAGTCTTAAAA
TTGTGTTTGTATGTGATTACCATGATACTCCCCTGCTTCCTAGTGTGTCT
CCACCTTCCTACCCTTCCTCAGCAATCACCTTGCCATTTTTATGTCTCAT
AGGTTCTGTTGGCATGCTTTAAATCTCCCCATCCCTAATTCCAATAGTCT
TCACACAAAGAAATCCATAAAGAAAGGGTTTAAGACCAGTTGTTCAATGC
TGAGTAATGATGTAAAATACAAATGTCATACTTCTTTTGACTGAATCAAA
CTGATGATCTCCAACTTGCAGTCAACAGTTCCTTAAGTCTATGTTAAATT
TTAAAACACAATACCTGTACTTGAGTGACAGCCCCTAAAAACCAAGAATG
CCAATATCCATTATGTTAAAACAAACACTTTCATTTGTAGTGTGAGGTTT
GCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_b17.b1 MSMg01no487_b17.b1 CHROMAT_FILE:
MSMg01no487_b17.b1 PHD_FILE: MSMg01no487_b17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:37 2005
         (620 letters)



>mm_chr11_91467658_91468677
          Length = 1020

 Score = 1083 bits (560), Expect = 0.0
 Identities = 602/616 (97%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtagtgtctagacttgtgttttgcagaaaaatgtaaacttgtttcctaccaaa 64
           |||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 820 gaattcagtagtgggtagacttgtgttttgcagaaaaatgtaaacttgtttcctacaaaa 761

                                                                       
Query: 65  agctttcttattttcttctaatgagaattattatctggcagataatcagtgttgaaacat 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 760 agctttcttattttcttctaatgagaattattatctggcagatgatcagtgttgaaacat 701

                                                                       
Query: 125 tgacagggcacttacaatgaagaaaatcccagccaacactatttaaagtccatctgaaga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tgacagggcacttacaatgaagaaaatcccagccaacactatttaaagtccatctgaaga 641

                                                                       
Query: 185 gttgtctctgaagagcagaaaacaggatgattgatggcaatttgtgagagggcatgctca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 gttgtctctgaagagcagaaaacaggatgattgatggcaatttgtgagagggcatgctca 581

                                                                       
Query: 245 aactttttattgggtcagcttgcctttaggcagaagggcttgaaaatgacaacacactca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 aactttttattgggtcagcttgcctttaggcagaagggcttgaaaatgacaacacactca 521

                                                                       
Query: 305 gttctcttcttgatatcagtgtagtggaggaaacccatgcaatggcagagcatggctcta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 520 gttctcttcttgatatcagtgtagtggaggaaacccatgcaatggcagatcatggctcta 461

                                                                       
Query: 365 tgctgagaatgagtagataagtgtatcattaggatacattatagggcaggaaagagagcc 424
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 460 tgctgagaatgagtagataagtgtatcattagggtgcattatagggcaggaaagagagcc 401

                                                                       
Query: 425 agtgaaagctagaatgcacaagggattatggtataataaatacagcccttactccaactt 484
            |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggtgaaagcaagaatgcacaggggattatggtataataaatacagcccttactccaactt 341

                                                                       
Query: 485 cctggtcagaaccttgaaaacatttatactttctaaagtgacaaatgggaaacagtactt 544
           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 340 cctggtcagaactttgaaaacatttatactttctaaagtgacaagtgggaaacagtactt 281

                                                                       
Query: 545 ttatttctttgtttctcagaagaagggcctgcgtatcttagttgagtttgtgttaagaat 604
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 280 ttatttctttgtttctcagaagaaggtcctgcatatcttagttgagtttgtgttaagaat 221

                           
Query: 605 gtgacttttgtgaaga 620
           ||||||||||||||||
Sbjct: 220 gtgacttttgtgaaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_b17.g1 MSMg01no487_b17.g1 CHROMAT_FILE:
MSMg01no487_b17.g1 PHD_FILE: MSMg01no487_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:37 2005
         (675 letters)



>mm_chr11_91313619_91314693
          Length = 1075

 Score = 1251 bits (647), Expect = 0.0
 Identities = 668/675 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtctcctacattcatcaccttccctgtaaacacatttctattatgtactcttaattt 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 201 tctgtctcctacattcatcaccttcccagtaaacacatttctattatgtactcttaattt 260

                                                                       
Query: 61  cttaatattttatttttttgaaaattttctcatgctctcatatcactatttcaacaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttaatattttatttttttgaaaattttctcatgctctcatatcactatttcaacaaaca 320

                                                                       
Query: 121 ccggcccctcttatgtgcttgtttcttcataaaatattgtgaacagagagattaaaaata 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccggcccctcttatgtccttgtttcttcataaaatattgtgaacagagagattaaaaata 380

                                                                       
Query: 181 atggtctgtgtctccttgtctcaaaatttatatattctggtgaagaattcaatctcagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggtctgtgtctccttgtctcaaaatttatatattctggtgaagaattcaatctcagac 440

                                                                       
Query: 241 aatcctaaatcatgagagttttatagtcttaaaattgtgtttgtatgtgattaccatgat 300
           ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 aatccaaaatcatgagagttttataatcttaaaattgtgtttgtatgtgattaccatgat 500

                                                                       
Query: 301 actcccctgcttcctagtgtgtctccaccttcctacccttcctcagcaatcaccttgcca 360
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 501 actcccctgctttctagtgtgtccccaccttcctacccttcctcagcaatcaccttgcca 560

                                                                       
Query: 361 tttttatgtctcataggttctgttggcatgctttaaatctccccatccctaattccaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttttatgtctcataggttctgttggcatgctttaaatctccccatccctaattccaata 620

                                                                       
Query: 421 gtcttcacacaaagaaatccataaagaaagggtttaagaccagttgttcaatgctgagta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcttcacacaaagaaatccataaagaaagggtttaagaccagttgttcaatgctgagta 680

                                                                       
Query: 481 atgatgtaaaatacaaatgtcatacttcttttgactgaatcaaactgatgatctccaact 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atgatgtaaaatacaaatttcatacttcttttgactgaatcaaactgatgatctccaact 740

                                                                       
Query: 541 tgcagtcaacagttccttaagtctatgttaaattttaaaacacaatacctgtacttgagt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgcagtcaacagttccttaagtctatgttaaattttaaaacacaatacctgtacttgagt 800

                                                                       
Query: 601 gacagcccctaaaaaccaagaatgccaatatccattatgttaaaacaaacactttcattt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gacagcccctaaaaaccaagaatgccaatatccattatgttaaaacaaacactttcattt 860

                          
Query: 661 gtagtgtgaggtttg 675
           |||||||||||||||
Sbjct: 861 gtagtgtgaggtttg 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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