Query= MSMg01no487_j08.b1 MSMg01no487_j08.b1 CHROMAT_FILE:
MSMg01no487_j08.b1 PHD_FILE: MSMg01no487_j08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:14 2005
(245 letters)
>mm_chr11_65752716_65753360
Length = 645
Score = 389 bits (201), Expect = e-112
Identities = 234/249 (93%), Gaps = 8/249 (3%)
Strand = Plus / Minus
Query: 1 ctttttttcctactggacttctcaggaaccttattatgaaat----ttccctaatcctaa 56
|||||||||||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct: 445 ctttttttcctactggacttctcaggaaccttattatgaaataacgt----taatcttaa 390
Query: 57 aagtgacagaccttatataaggaaaataaaacctctgattaatttatgaccagtctcatg 116
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 389 aagtgacagacattatataaggaaaataaaacctctgattaatttatgatcagtctcatg 330
Query: 117 gagcctgtgcaaaatgctaatcacatgaatctaatcaaacacccatatgcaaacaagtag 176
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 329 aagcctgtgcaaaatgctaatcacatgaatctaatcaaacacccatatgcaaacaaggag 270
Query: 177 tactagacaataataaaccatttaaataaccatacccatcatattttgagaagaaaagct 236
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 269 tacaagacaataataaaccatttaaataaccatatccatcatattttgagaagaaaagct 210
Query: 237 ggaagtccc 245
|||||||||
Sbjct: 209 ggaagtccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no487_j08.g1 MSMg01no487_j08.g1 CHROMAT_FILE:
MSMg01no487_j08.g1 PHD_FILE: MSMg01no487_j08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:14 2005
(513 letters)
>mm_chr11_65624659_65625571
Length = 913
Score = 901 bits (466), Expect = 0.0
Identities = 497/510 (97%), Gaps = 6/510 (1%)
Strand = Plus / Plus
Query: 1 agttctctcctactgtgtgggtcccagaggctgaactcaggttgtcaggcttagcagcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttctctcctactgtgtgggtcccagaggctgaactcaggttgtcaggcttagcagcaa 260
Query: 61 gtgacttggcctgctgagccatctcacaagccctcatctgcctttgaaggaggttatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgacttggcctgctgagccatctcacaagccctcatctgcctttgaaggaggttatcag 320
Query: 121 aattaaaaaaatatgtagcatttgtattcaccagacattgactgtttttgcttcttttta 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aattaaaaaaatatatagcatttgtattcaccagacattgactgtttttgcttcttttta 380
Query: 181 ttcttttctgaagataggagttttctagcagtgggaggaatgaatgacctttattcttgt 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 381 ttcttttctgaagataggagttttctagcagtaggaggaatgaatgacctttattcttgt 440
Query: 241 agtggaaattcactagtgacaaattttctgagttctttttgaaaaatttgttcatggctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtggaaattcactagtgacaaattttctgagttctttttgaaaaatttgttcatggctg 500
Query: 301 tgtgtgcatgtggcatgtatggtatgtgcagtgtgtgtgtgtgtgtgtggtgcatgtatg 360
|||||||||||||||||||||||||||||||| ||||| | |||||||||||||||
Sbjct: 501 tgtgtgcatgtggcatgtatggtatgtgcagtatgtgt-t-----tgtggtgcatgtatg 554
Query: 361 tgtggtgtatgtgtctgtatatgcctttatatgtatgcatggtatatgtgtgtgtgtgtc 420
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 555 tgtggtgtatgtgtctgtatatgcctttatatgtgtgcatggtgtatgtgtgtgtgtgtc 614
Query: 421 tgtgcatgagtctgcagtgtgtgtatgtgtgtgcatgtgtgtctgtgtgtgtgtgtggtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tgtgcatgagtctgcagtgtgtgtatgtgtgtgcatgtgtgtctgtgtgtgtgtgtggtg 674
Query: 481 tgtgcttagtgtggtgtgtgtgtggtgtgt 510
|||||||||||||| ||||||||||||||
Sbjct: 675 tgtgcttagtgtggactgtgtgtggtgtgt 704
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 66
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space: 454209
Effective search space used: 454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
