BAC Information

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BAC

Clone NameMSMg01-487O06
Chromosome11 (Build37)
Map Location 69,806,120 - 69,806,292
singlet/doubletsinglet
Overlap geneGabarap
Upstream genePfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard
Downstream genePhf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487O06.T7 (MSMg01no487_o06.b1)MSMg01-487O06.TJ (MSMg01no487_o06.g1)
ACCAG566745AG566746
length733733
length of high quality
(start - end)		121 (130 - 250)172 (79 - 250)
definitionCHROMAT_FILE: MSMg01no487_o06.b1 PHD_FILE: MSMg01no487_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:38 2005CHROMAT_FILE: MSMg01no487_o06.g1 PHD_FILE: MSMg01no487_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATTATCCCAAAAATCGCGGGCGCAAANGAACACCAATTCCGCACTGGCG
NGGAANNNNGGNGTTCCCATACCAGGGGNNNNNNAGNNNNNAAGAGGGAC
AAGAAGCNGGNGCNCATTACTCGCACCAGGGAAACCAGGAATGGTAAGCA
CACATGCTTGTCTCGTCATCGGAGGAGATGTAGACCTGTTTCCTACCAGA
AGGCTGGGGTGGGTGTGGTTAATAACCTGATGATCTGTGTTCTCTGAATT
TTTTTGTCCACACCCAATACTCCCAGACTCTTATGTTTATTCTTCCTCCC
TAGGCCTTNATCTTGAGTTTTTTTGTTCTCAGNCAANAGAGCCAATCCCT
ACACTCCATCCCCTCCTAGGCCCTTAAAGCTATAGATCCAGTATTTATGG
AAGAGGTCACATGTACTTCCCCCACCAATTCAAATGTGTCACATCTTAAA
CTTTATTGTACACATGGGATTGAGATCATTGTCACCAAACTGCACTGTAC
TTAAGTGTCTAAAATAAATGGCCCAGTGCTAGACTCTAGAAGTTTGAAGT
AACCCTGCTAACTAAGCTGTATCGGACCGGATTTTCTTTCTATTGCACGC
GGATTTCTCATGATCTCAGTCTGCTGGCGGGGGCAAAAGGACCCCATACG
TTTCTTCTTATTAGGTCTTTCACCTTGGCTCAGATAGACCCCCAGAGTCT
TGGATGGTACTGGTTTCCTGACTTCTTTTGGAT

GCTTTTGTTCATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTCCGTGCTGAAGATGCCTT
GTTTTTCTTTGTCACAATGTCATTCCACCCACCAGTGCCACGATGGGTCA
GCTGTACCAGGTACAGTACCTTGGAAGGAACGGTAGTGTTTGGAGAGGAA
AGTAAAGGCCAGCGGTCGCTGCTGGCTAACTTTAAAATGTCAGTACAGCC
CTGCCGTGGGATCTTACTAGCGGTGAGAATAGGGAAGAGTATGAACTGTT
GGAGTTGTTCTGACTGGGGATTTATTATCTTAAGGGAGTTTTTCCAAAAG
CCCCAGAAGTCAAAAAATAAATTTGCTTTTTTAAGAATGGGGGGGTTGTT
GGTATGTAACTTTTCGGGTCGGTTTCCTCTTTAGAAAAACAGGGGTTTTT
CTCTGGGGAAAACCCCGGGGCGGGGCCCTGGGAAATCCCCCCCTCGGGGA
AACAAAGGGTGGGGCCTTTTATAATCCTCCCAAGAACACCCCCCTTGTGT
TTTTTTGGCGCCTCCCCTAGGGGGGGGGGGGGTTTAAAAAAAAAGAGGGG
GGGGGGGGCCACACACCCCGGCCTTTTCAAAATATTGTGGTTTCTCGTTC
AAACTCTTTGTGCGTTCTCCCCCCTTTTTATATAATATATTCTCTCCTTG
GGTTGGTTTCTCCCCCTTTACGGGGGGGGGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_o06.g1 MSMg01no487_o06.g1 CHROMAT_FILE:
MSMg01no487_o06.g1 PHD_FILE: MSMg01no487_o06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:38 2005
         (172 letters)



>mm_chr11_69805920_69806492
          Length = 573

 Score =  327 bits (169), Expect = 2e-94
 Identities = 172/173 (99%), Gaps = 1/173 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atctccgtgctgaagatgccttgtttttctttgtca-caatgtcattccacccaccagtg 59
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 atctccgtgctgaagatgccttgtttttctttgtcaacaatgtcattccacccaccagtg 260

                                                                       
Query: 60  ccacgatgggtcagctgtaccaggtacagtaccttggaaggaacggtagtgtttggagag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacgatgggtcagctgtaccaggtacagtaccttggaaggaacggtagtgtttggagag 320

                                                                
Query: 120 gaaagtaaaggccagcggtcgctgctggctaactttaaaatgtcagtacagcc 172
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaagtaaaggccagcggtcgctgctggctaactttaaaatgtcagtacagcc 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 573
Length adjustment: 8
Effective length of query: 164
Effective length of database: 565
Effective search space:    92660
Effective search space used:    92660
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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