BAC Information

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BAC

Clone NameMSMg01-487P18
Chromosome11 (Build37)
Map Location 120,724,969 - 120,725,534
singlet/doubletsinglet
Overlap geneCcdc57
Upstream gene4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn
Downstream geneLOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487P18.T7 (MSMg01no487_p18.b1)MSMg01-487P18.TJ (MSMg01no487_p18.g1)
ACCAG566817AG566818
length769772
length of high quality
(start - end)		---620 (74 - 693)
definitionCHROMAT_FILE: MSMg01no487_p18.b1 PHD_FILE: MSMg01no487_p18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:45 2005CHROMAT_FILE: MSMg01no487_p18.g1 PHD_FILE: MSMg01no487_p18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATATTGTTGCGCTATACACTCACATGGTTTCAGACCGCGGAATTCTTAA
AGCTTTTCCCCAGAACTTGCTTCATAACGTGGAGATCATGCAGGAATCCG
TGCGCTGTGTTCTACAATTCTTAACTGAGATTAGATTCCGCCATATGTGC
TGACGTGCTGCGTGTGATTGCTCCAACTCTGCTGAAGGTAGAGAAAGGCT
CTGAGCAAAACAACTGGCCTGTGGCACGCGAGTTACAATAGGAGAGCCTT
TTTAACATAATTTTACATTAAGGTCTTTTCCTTTACTCTCTACCTACAAG
ATGGGAATCTCATTCTATGCCTCATCCCAATGCGCACAGGCAGCTAAGGT
TCTTCTTTCCCTCTACCGTACTTATTGACCGGTTTGTAATTTCATCTGAT
GGCTTTCTGAACTTTTCCTTGCAAAGCATGGAATATGCATCTCTCAAGGA
ACATATAATGTGGTTTGAGCACTCGACTCGGTCCCGCCTGGTGCTGCTTA
TTGTAAACCATGTGCGGACCCATTGAACGGCTTCCACTCTCACCTGAGCA
GTCAGACACCGTGTGTATCCTTTGAAGCCTCCCCGGCGGCTGACCTGACC
CTCCCTTTTTTTTTTATTCGGACAGCGACAATAAACCCTGTTGATTGCCA
CTAATACACTTCTTTTGACCCCGAGTAAATCATTACTTTCCCCGGACTAT
ACACTTACATTTCTTTGTATACTAACCCTCCATCGTCCCTTCTGTTTACT
TTGCTACACTATCCTTTTG

ATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCCATCCAAGGCTGCACAGTGAAA
CCCTGTCTCAAAACAAAAAACAAAATGACCTCTCCTCAGGTTTTACCCAG
AACAGTCAGGACTTGCAAGATAGGAATCCCCAGGTGGCCCAGTGTCCAGG
GCTGTCCACTCAGAACTTCAGCTGAGGCCTGCCTCCCTGAGACCTGAGGT
AAGGGCCTACCTCCCTGAGACCTGAGGTTAGGGGCCTGCCTCCCTGAGAC
CTGAGGTAAGGGCCTGCCTCCCTAAGACCTGAGGTAGGGGCCTGCCTCCC
TGAGACCTGAGGTAGGGCCTGCCTCCCTGAGACCTGAGGTAGGGCCTGCC
TCCCTGAGACCTGAGGTAGGGCCTGTCTCCCTGAGACCTGAGGTAGGGGC
CTGCCTCCTTGAGACCTGAGGTAGGGGCCTGCCTCCCTGAGACCGGAAGT
GGCATACCTCTGACATGGGAATGTTCATATTGCTTTTTCTTCCCACAAGT
CTCAATACAACTAGTAATTCCCACCATTGACTGATGAACATAACGAGCTT
GTGCCTTGGAGCCAAATGTGTACATAGCAGGGTTATTTGATTTTGAGAGT
CCTGCAATCTTCCTGCCAAGGTTCCTAAAGTGCAAAGGACTTCAGGTAAC
CACAGTGGGCCAGCTGAATGTAGGTTTTATGCTACTAATGATCATCGGCT
TTTCTAANGGCATGAGAATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_p18.g1 MSMg01no487_p18.g1 CHROMAT_FILE:
MSMg01no487_p18.g1 PHD_FILE: MSMg01no487_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:45 2005
         (620 letters)



>mm_chr11_120724560_120725582
          Length = 1023

 Score =  963 bits (498), Expect = 0.0
 Identities = 564/620 (90%), Gaps = 54/620 (8%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccatccaaggctgcacagtgaaaccctgtctcaaaacaaaaaacaaaatgacctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 caggccatccaaggctgcacagtgaaaccctgtctcaaaacaaaaaacaaaatgacctct 916

                                                                       
Query: 61  cctcaggttttacccagaacagtcaggacttgcaagataggaatccccaggtggcccagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 cctcaggttttacccagaacagtcaggacttgcaagataggaatccccaggtggcccagt 856

                                                                       
Query: 121 gtccagggctgtccactcagaacttcagctgaggcctgcctccctgagacctgaggtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gtccagggctgtccactcagaacttcagctgaggcctgcctccctgagacctgaggtaag 796

                                                                       
Query: 181 ggcctacctccctgagacctgaggttaggggcctgcctccctgagacctgaggtaagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ggcctacctccctgagacctgaggttaggggcctgcctccctgagacctgaggtaagggc 736

                                                                       
Query: 241 ctgcctccctaagacctgaggtaggggcctgcctccctgagacctgaggtagggcctgcc 300
           |||||||||| |||||||||||||||| ||| ||||||||||||||||||||        
Sbjct: 735 ctgcctccctgagacctgaggtagggg-ctgtctccctgagacctgaggtag-------- 685

                                                                       
Query: 301 tccctgagacctgaggtagggcctgcctccctgagacctgaggtagggcctgtctccctg 360
                             ||||||||                           |||||||
Sbjct: 684 ------------------gggcctgc---------------------------ctccctg 670

                                                                       
Query: 361 agacctgaggtaggggcctgcctccttgagacctgaggtaggggcctgcctccctgagac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 agacctgaggtaggggcctgcctccttgagacctgaggtaggggcctgcctccctgagac 610

                                                                       
Query: 421 cggaagtggcatacctctgacatgggaatgttcatattgctttttcttcccacaagtctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cggaagtggcatacctctgacatgggaatgttcatattgctttttcttcccacaagtctc 550

                                                                       
Query: 481 aatacaactagtaattcccaccattgactgatgaacataacgagcttgtgccttggagcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aatacaactagtaattcccaccattgactgatgaacataacgagcttgtgccttggagcc 490

                                                                       
Query: 541 aaatgtgtacatagcagggttatttgattttgagagtcctgcaatcttcctgccaaggtt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaatgtgtacatagcagggttatttgattttgagagtcctgcaatcttcctgccaaggtt 430

                               
Query: 601 cctaaagtgcaaaggacttc 620
           ||||||||||||||||||||
Sbjct: 429 cctaaagtgcaaaggacttc 410


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 94
Number of extensions: 14
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1023
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1013
Effective search space:   617930
Effective search space used:   617930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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