BAC Information

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BAC

Clone NameMSMg01-488A23
Chromosome11 (Build37)
Map Location 68,824,183 - 68,824,731
singlet/doubletsinglet
Overlap genenone
Upstream geneStx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42, Myh10, Ndel1, 9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas
Downstream gene1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488A23.T7 (MSMg01no488_a23.b1)MSMg01-488A23.TJ (MSMg01no488_a23.g1)
ACCAG566874AG566875
length698693
length of high quality
(start - end)		49 (45 - 93)628 (58 - 685)
definitionCHROMAT_FILE: MSMg01no488_a23.b1 PHD_FILE: MSMg01no488_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:51 2005CHROMAT_FILE: MSMg01no488_a23.g1 PHD_FILE: MSMg01no488_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACACTATTTCAANAAGATCCGCGGAANTCAAAGGCTACCTGAACTGTGG
AGCTCATTTCTCCTGTGCCCTTTACCTAATCTTTGTTCCTTAAACTCTAG
TTCATTGGGAATCAAAGTTTTTGTCCCTGGGTTGGGTGCTAGGGGTTACG
TGGTGGTGTTGGGTGGTGGGCGGCGTGNTTCTANACANNNACNCNGNACC
TCTGCCTGCCCAAAAACCCACTGATAAAAACAGCNGCCCTCAACTCCCAA
AANGCNCCCCGCAANGTGCACCTCTAACCCAACCTGGATTCCCTTTTTTN
TTTTTTTTTTTTTTTTCCAAAAAAAAAAGGTTCCCTGGAAAACCCGGCTA
ACCAAAAAAATCCCCCAAAAACCCGGCCAACCTTAAACCAGAAACCCAAA
AAACACCCCCTCCCACCCCCCCAAAAATTGGGAAAAAAAGGGGACCACCA
CCCCCCCCGCTTTGGAAACCCCCTTTTTTTTTAAAAAAAATAGAGTTTTT
GTTTTAAAAAAACCCGGAATCTTTTCACAAAACACAAAAAGGCCCCCCCA
CACCCCAAAAAAATATTTTAAACCCCACCANNATCCCCCCAAAAAAACCC
CCCCCCCCTAAAAAAAAAAAAAGTTTCTACACAAAAAAAAACCCCCCCCC
CCCCTTATCCNNNNAAAAACATATTATTAAAAAGATGGTGGAGGCGCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATAGATAGAAACGATGGGTTTGGACTGGGTCTTCTCCTACCAT
CCCGTTAGTATGGTTTAAATGTCGGGTTTCTTTAACGTTGGTGGAACAGG
TCAGAAGCGGCATGCATAAAAACAAAGCTCCAAGCTGCTGTCTGAAGCAT
CATTCAGAGTTCCTTTACCCTTTAAGGACCTTCACTCAGATAAGACTGGT
CCCGTGCTTTAACTCAAAAGAATCTCGGAGTGAGCCAATAGTGAACCAGA
GTCGGCTCTTGTGTTTGTTTCCCTTTGTTTTTTAAGATTTCATTTTGGTA
TTAGAGAAATACCTGAACAGTTAAGAGCACAACAGAAAACTCAGGTCAGT
TCTCAGCACCCTCATCCAGTGGCTCACAAGTGTGTGTAACTCCAGCTCCC
GAGTCTGACCTGGGAGAATTGAGAACACCTGCCTCCCTGTGCGGTGCACA
AGCTCCCACATGGGTGGATGGTCCTGCACCATCTTTCCACATGTTTACAA
TTTTTTTATTTTTTATTTTTGGTTTTTCCAGACAGGGTTTCTCTGCGTAG
CCCTGATTGTCCTGGAACTCACTCTGTAAATTGGCTGGCCTCGAACTCAG
AAATCCGCCTGCCTCTACCTCCCAAGTGCTGGGATTAAAGGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_a23.g1 MSMg01no488_a23.g1 CHROMAT_FILE:
MSMg01no488_a23.g1 PHD_FILE: MSMg01no488_a23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:51 2005
         (628 letters)



>mm_chr11_68823704_68824731
          Length = 1028

 Score =  961 bits (497), Expect = 0.0
 Identities = 538/557 (96%), Gaps = 12/557 (2%)
 Strand = Plus / Minus

                                                                        
Query: 76   taacgttggtggaacaggtcagaagcggcatgcataaaaacaaagctccaagctgctgtc 135
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1028 taacgttggtggaacaggtcagaagcggcatgcatagaaacaaagctccaagctgctgtc 969

                                                                        
Query: 136  tgaagcatcattcagagttcctttaccctttaaggaccttcactcagataagactggtcc 195
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 968  tgaagcatcattcagagttcctttaccctttaaggaccttcactcagataagactggtcc 909

                                                                        
Query: 196  cgtgctttaactcaaaagaatctcggagtgagccaatagtgaaccagagtcggctcttgt 255
            ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 908  cgtgctttaactcaaaagaatctcggagtgagccaatagtgaaccagagccggctcttgt 849

                                                                        
Query: 256  gtttgtttccctttgttttttaagatttcattttggtattagagaaatacctgaacagtt 315
            | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 848  gcttgtttccctttgttttttaagatttcattttggtattggagaaatacctgaacagtt 789

                                                                        
Query: 316  aagagcacaacagaaaactcaggtcagttctcagcaccctcatccagtggctcacaagtg 375
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  aagagcacaacagaaaacccaggtcagttctcagcaccctcatccagtggctcacaagtg 729

                                                                        
Query: 376  tgtgtaactccagctcccgagtctgacctgggagaattgagaacacctgcctccctgtgc 435
            ||||||||||||||||      |||||||||||||||||||||| |||||||||||||| 
Sbjct: 728  tgtgtaactccagctc------ctgacctgggagaattgagaacgcctgcctccctgtgt 675

                                                                        
Query: 436  ggtgcacaagctcccacatgggtggatggtcctgcaccatctttccacatgtttacaatt 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674  ggtgcacaagctcccacatgggtggatggtcctgcaccatctttccacatgtttacaatt 615

                                                                        
Query: 496  ttttta-ttttttatttttggtttttccagacagggtttctctgcgtagccctgattgtc 554
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614  tttttatttttttatttttggtttttccagacagggtttctctgcgtagccctgattgtc 555

                                                                        
Query: 555  ctggaactcactctgtaa---attggctggcctcgaactcagaaatccgcctgcctctac 611
            ||||||||||||||||||   |  ||||||||||||||||||||||||||||||||||||
Sbjct: 554  ctggaactcactctgtaaacca--ggctggcctcgaactcagaaatccgcctgcctctac 497

                             
Query: 612  ctcccaagtgctgggat 628
            |||||||||||||||||
Sbjct: 496  ctcccaagtgctgggat 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1028
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1018
Effective search space:   629124
Effective search space used:   629124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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