Query= MSMg01no488_e06.b1 MSMg01no488_e06.b1 CHROMAT_FILE:
MSMg01no488_e06.b1 PHD_FILE: MSMg01no488_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:08 2005
(682 letters)
>mm_chr11_116987586_116988667
Length = 1082
Score = 1257 bits (650), Expect = 0.0
Identities = 675/684 (98%), Gaps = 3/684 (0%)
Strand = Plus / Plus
Query: 1 aaagctggatatggtagtccactgtgtgcacatctgttcatagtgtagtccagtgtgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagctggatatggtagtccactgtgtgcacatctgttcatagtgtagtccagtgtgtgt 260
Query: 61 gcacatctgttcatagtgtagtccactgtgtgtgcacatcagttcatagtgtagtccact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacatctgttcatagtgtagtccactgtgtgtgcacatcagttcatagtgtagtccact 320
Query: 121 gtgtgtgcacatcagttcatttattgatgaacacttgggctgcttctaccttttgactat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgcacatcagttcatttattgatgaacacttgggctgcttctaccttttgactat 380
Query: 181 ggggtgtaatgcacactgtaaacaaacattttaaaggtgttattctgtgtgtctaatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggtgtaatgcacactgtaaacaaacattttaaaggtgttattctgtgtgtctaatgta 440
Query: 241 tgcacatgtgtgtggaagcgaacagacacctggctggagtttctcactcttccactgtga 300
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcacatgtgtgtggaagcgagcagacacctggctggagtttctcactcttccactgtga 500
Query: 301 ggctcttggggtcacacctgtgttcacatgcctttaccttctgagttactgtgtcaaccc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggctcttggggtcacacctgtgttcacatgcctttaccttctgagttactgtgtcaaccc 560
Query: 361 ctgggctgtacttttgagtttgttaagatttatttttattttatatgtgtatgcgttttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctgggctgtacttttgagtttgttaagatttatttttattttatatgtgtatgcgttttg 620
Query: 421 cctgtgtgtctgtctgtgtaccatgtgtgtgcctggtgcctgcagggtccagaaagtgcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 cctgtgtgtctgtctgtgtaccatgtgtgtgcctggtgcctgcagggtccagagagtgcc 680
Query: 481 agatcccttggaatggaggggtgtccatatatgctgtcgtgggccaccatgtgggtgctg 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 agatcccttggaatggaggggtgttcatatatgctgtcgtgggccaccatgtgggtgctg 740
Query: 541 ggaactaaatccaggttctctgtaagacagcaagtgctcttaaccactgagccatctctc 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaactaaatccaggtcctctgtaagacagcaagtgctcttaaccactgagccatctctc 800
Query: 601 cagcaccatactgcacatttaaaaaactttttactgtaatattaaccaaaaataaa--tg 658
|||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||| ||
Sbjct: 801 cagcaccatactgcacatttaaaaaa-tttttgctgtaatattaaccaaaaaaaaaaatg 859
Query: 659 atataattacatgcttcccaggag 682
||||||||||||||||||||||||
Sbjct: 860 atataattacatgcttcccaggag 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space: 720384
Effective search space used: 720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_e06.g1 MSMg01no488_e06.g1 CHROMAT_FILE:
MSMg01no488_e06.g1 PHD_FILE: MSMg01no488_e06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:08 2005
(323 letters)
>mm_chr11_117099162_117099883
Length = 722
Score = 514 bits (266), Expect = e-150
Identities = 290/298 (97%), Gaps = 1/298 (0%)
Strand = Plus / Minus
Query: 1 aatagacaatgttgatcaataggatttgcctgtctatagaacacacccaccacgtccaca 60
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 416 aatagacagtgttgatcaataggctttgcctgtctatagaacacacccaccacgtccaca 357
Query: 61 gtgactatccaggtcctggaggatggtccttgcccaccaacacaggtcacgaacgcagac 120
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 356 gtgactatccaggtccttgaggatggtccttgcccaccaacacaggtcacaaacgcagac 297
Query: 121 caaggctaccatctccaggaaggacaccaatcccccaaccctttctcgccaccttgggct 180
|||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 296 caaggctaccctctccaggcaggacaccaat-ccccaaccctttctcgccaccttgggct 238
Query: 181 gggacaccaggcagaaccctgaatctgtaatgtataccttcttcttcttcttcttcttct 240
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 237 gggacaccaggcagaaccctgaatctgtaaggtataccttcttcttcttcttcttcttct 178
Query: 241 tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctt 120
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 140
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space: 223882
Effective search space used: 223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
