BAC Information

Click to search

BAC

Clone NameMSMg01-488E20
Chromosome11 (Build37)
Map Location 104,702,878 - 104,703,527
singlet/doubletsinglet
Overlap geneLOC632784
Upstream geneNsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749
Downstream geneLOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, Tanc2, LOC667737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488E20.T7 (MSMg01no488_e20.b1)MSMg01-488E20.TJ (MSMg01no488_e20.g1)
ACCAG567059AG567060
length698741
length of high quality
(start - end)		639 (56 - 694)653 (83 - 735)
definitionCHROMAT_FILE: MSMg01no488_e20.b1 PHD_FILE: MSMg01no488_e20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:11 2005CHROMAT_FILE: MSMg01no488_e20.g1 PHD_FILE: MSMg01no488_e20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAT
TCCGTGTAGTAATGGAATCTTAAAGAGCTTTCCATTTGTAAGCTCTAGTC
ATCTGAAAACAGGGACAATTTGTGCCTGCCCTACAATTTGGGTGTCACCT
TTCCTGTCTGTTCCCTATTGCTATGGCTAGGATTTCTAGTGCTGTGCTAG
AAAGAGTGAGCTTGACCTTAAAGGAAAAGTTTTCTACTTTTCAATATCAA
GTAAGAAGTTAGGTAGGGCTTTGTCATATGTCGCTTTTATGTGTTTAAGA
CTATTGCATTCAAAGGTTATATCATTAAATAATGTTCAGCTTTATCAAAT
ACTTTTTGTGCATCTATTGAAATTACCATGTTATTTTTATCTTTTATATT
GCTTAAAGTTTTAAATTATATTATTGTATTAATGTGTCTCAGATAGGGTA
TACAAGTTTGCCATTCACACATACAGATCAGAGGACAGTTTGCAGAAGTC
AGTTTTATCTTGCCATGATGTGGGTCCTGGGGATCAAACTCAAGTTGTCC
AACTTGGTGGCACGCACCTTTACCCACTGAGCAATCTTGCCAGTCCTCCT
TTAGGCTGTTAATATATACTATATTTATAGGCTTCTATGTGATGGTCCAA
CTTTGCATATCAGCTATAAATGCCACTTGGACATGGTGGTAGATCCTT

GTTTGTGCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTGCATACCAGGTCA
GCCTTGAATACACAGTGATCCTCCTGCCTCTGTCACCCAAGTGCTGATAC
TAAAGCTATACACTACCCCTCCCAGCCACCATTCATTCTTTTATCCCATA
AATAATGGTTTCTCAGGGTCTATTAATGAGGAACGTTCGCACTGGCAAAG
CTTCATAGGGTAAAGAGGACCACCATTTTGTATAGCATTGCTTAATGTAG
ACAATAGATAACCAGGCCCTAAGATATTAGATAGGACTTTCCACAATACA
AACGTTAAAAAGAATAACAAGTATATAACTGGGTAACTCAGTATACTAAA
ATTATAGAGAAACAAGATCTTAGACTCAGGATACTTTCTCATTAACATTT
TTCAGTATTTACTGTATCCATTAATTTGTTGAGATCAGTCTTCTTTTTAG
CTATAGGAAAAGAGAGGGGAGAGTTCACCATGCTTCAGAGAGAGAAAAGC
CAAGTAGCCATGTGATATCTCAGGCAGAGTGGCCACAGGCCACTTAACTG
AGCAACGAACGTTGAGGACAGATTTAGGGTGCTGAGCTAAGAGTATTGGG
AGGGTACACTAGCCATGGGAGTTTACTAATGCCCCACAATTGAGCCAACA
AGGCAAGCTGAAAATGAGTAATGTCTATCTCTGTGTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_e20.g1 MSMg01no488_e20.g1 CHROMAT_FILE:
MSMg01no488_e20.g1 PHD_FILE: MSMg01no488_e20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:11 2005
         (653 letters)



>mm_chr11_104702806_104703855
          Length = 1050

 Score = 1093 bits (565), Expect = 0.0
 Identities = 630/653 (96%), Gaps = 3/653 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   attttgcataccaggtcagccttgaatacacagtgatcctcctgcctctgtcacccaagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 722 attttgcataccaggtcagccttgaatacacagtgatcctcctgcctctgtcacccaaat 663

                                                                       
Query: 61  gctgatactaaagctatacactacccctcccagccaccattcattcttttatcccataaa 120
           |||| |||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct: 662 gctggtactaaaggtatacactaccccactcagccaccattcattcttttatcccataaa 603

                                                                       
Query: 121 taatggtttctcagggtctattaatgaggaacgttcgcactggcaaagcttcatagggta 180
           |||||||||||| ||||||||||| |||| ||||| ||||||||||||||||||||||||
Sbjct: 602 taatggtttctctgggtctattaaggagggacgtttgcactggcaaagcttcatagggta 543

                                                                       
Query: 181 aagaggaccaccattttgtatagcattgcttaatgtagacaatagataaccaggccctaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 542 aagaggaccaccattttgtatagcattgcttaatgtagacaatagataatcaggccctaa 483

                                                                       
Query: 241 gatattagataggactttccacaatacaaacgttaaaaagaataacaagtatataactgg 300
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 482 gatattagataggactttccacaatactaacgttaaaaagaataacaagtatataactgg 423

                                                                       
Query: 301 gtaactcagtatactaaaattatagagaaacaagatcttagactcaggatactttctcat 360
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 422 gtaactcagtatactaaaattatagagaaacaggatcttagactcaggatactttctcat 363

                                                                       
Query: 361 taacatttttcagtatttactgtatccattaatttgttgagatcagtcttctttttagct 420
           ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||
Sbjct: 362 taacatttttcagtatttactgtatccattaatttgttgagatcag---tctttttagct 306

                                                                       
Query: 421 ataggaaaagagaggggagagttcaccatgcttcagagagagaaaagccaagtagccatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ataggaaaagagaggggagagttcaccatgcttcagagagagaaaagccaagtagccatg 246

                                                                       
Query: 481 tgatatctcaggcagagtggccacaggccacttaactgagcaacgaacgttgaggacaga 540
           ||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct: 245 tgatatctcaggcagagtggccataggccacttaactgagcaactaaagttgaggacaga 186

                                                                       
Query: 541 tttagggtgctgagctaagagtattgggagggtacactagccatgggagtttactaatgc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 tttagggtgctgagctaagagtattgggagggtacactagccatgggagtttactaatgc 126

                                                                
Query: 601 cccacaattgagccaacaaggcaagctgaaaatgagtaatgtctatctctgtg 653
           |||||||||||||||| ||| |||| |||||||||| ||| ||||||||||||
Sbjct: 125 cccacaattgagccaaaaagacaagttgaaaatgagcaatatctatctctgtg 73


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1050
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1040
Effective search space:   668720
Effective search space used:   668720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |