BAC Information

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BAC

Clone NameMSMg01-488I20
Chromosome11 (Build37)
Map Location 119,855,609 - 120,050,143
singlet/doubletdoublet
Overlap geneBaiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384
Upstream geneCbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa, Eif4a3, Card14, Sgsh, Slc26a11, LOC672511, Rnf213, A730011L01Rik, Nptx1, 4932417H02Rik, Chmp6
Downstream geneLOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488I20.T7 (MSMg01no488_i20.b1)MSMg01-488I20.TJ (MSMg01no488_i20.g1)
ACCAG567248AG567249
length645713
length of high quality
(start - end)
323 (295 - 617)580 (76 - 655)
definitionCHROMAT_FILE: MSMg01no488_i20.b1 PHD_FILE: MSMg01no488_i20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:30 2005CHROMAT_FILE: MSMg01no488_i20.g1 PHD_FILE: MSMg01no488_i20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:30 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(120,049,821 - 120,050,143)(119,855,609 - 119,856,188)
sequence
AGAATCAAAAGACGGGGGGNGGAATTCTCCGTTTCAGAAACGGGATGTTT
AATTTAGGGAAACCTGGGCTTGGCTTCTGCTGCGCGCCGGCTGTCTAGGA
ACGAATCCCTCCTGGATCCGGGAACCCCAGATTTGCGGGGTTAGGAGATA
CCCTCAGAGTTGTGGTTTTTTGTTGGTGATGGTTTGTTAAGAGCCTGGTA
GCTGAACTGGAGCGGGCCCCGTCCCCTCCCCCATACCCACTTCAAACAAA
AGAGCTCCTCCGAGAATATTTTTTAAGGGGAAAGCGTTTTTGATTGTGGA
CCCGCAGTTCTCCCCGCCCCCCGTTCCGAGGAAGGACAAGGGTTTTATAT
GTGTGTTTAAAACAAAGGCGAAGCTAGGCGCGAGTTGCCGGGAAAGGGCC
GCTTTTATTTTAAAGTTCTTGAAGAATTCACTTTCTTTTCTCCCAAGTTA
GCTGCAGCTGAGCCAGAAGCGTCCCCACTGGCTTACCCGATAGTGGGATT
TTACACGGTGTCGGCTAAGGGTGGCTTTGTGAGAAGACCATTTCAGAAGA
AGAAACGGGGCTCTGGCTGGTGGGGTAGAAACCCCTATGGAATGAAAAGT
ACTCCCAGTCTCTTTGAGGAAGATTGCAAAGTAAGGTGGGTTGTN
CGTATGCAGTGGGAGGGCGGGNGGNCGCCATTTTCAAAACAGGGAGNGNG
ACACTATAGATTGCCACGCGGAGGTCTTAAATCACTGTTGGCTTTTCTGC
TCTAGCTGAGGTCTAGACTGATGACATTCTAGGGAGGGAGTAACACAGTC
CTCCGGCCTCTGGAAGGGTTGGCTTTCCATCTTCCTCAGACCTGACTATG
CCCATCTGAACACCTGGTGGCCCATGGGCTAGTGGGTCTACAAGCCATGA
TACTGGTGACTTCTAGCCTCTAAGGCCGGACCATGTCACCAGACTCTGGA
CCTTCCTGGCATACTGTCTATTGGCTGCCATAGTTTGGCTGTCCCTGTGA
AACTGGCCACTCTCATCCCATGCCACACTTCCTAGGCAGCTGTGGGGTCC
TGCCTAGCTCCAGGTGCCTTCTTCTCAACCCAGAGCTGGTCACATGGTGT
CCTCAGAGTCCTTCCTTGTCCCCACTTTTTCTGGTGCTATCAAGCACTAG
GTTTGTGGTGACTCATTAAGTCTGCCATTCCTGGTCCCTCCTTGACCCCT
GAGAAACCAACCCCCTTCCACCAAGTCTAGTGAGTGCTCCCTACTAAACA
CCTCCCCCCATGTTTTCTCTCTCTGCTCTCTTCCATCACATACATGTTCA
CGTGTATACACACTAATGCTCACACACACACACACACATTTTCTGGGAAG
TGCCACATTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_i20.b1 MSMg01no488_i20.b1 CHROMAT_FILE:
MSMg01no488_i20.b1 PHD_FILE: MSMg01no488_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:30 2005
         (323 letters)



>mm_chr11_120049621_120050343
          Length = 723

 Score =  609 bits (315), Expect = e-179
 Identities = 321/323 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggacccgcagttctccccgccccccgttccgaggaaggacaagggttttatatgtgt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 tgtggaccctcagttctccccgccccccgttccgaggaaggacaagggttttatatgtgt 464

                                                                       
Query: 61  gtttaaaacaaaggcgaagctaggcgcgagttgccgggaaagggccgcttttattttaaa 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 463 gtttaaaacaaaggcgaagctagacgcgagttgccgggaaagggccgcttttattttaaa 404

                                                                       
Query: 121 gttcttgaagaattcactttcttttctcccaagttagctgcagctgagccagaagcgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gttcttgaagaattcactttcttttctcccaagttagctgcagctgagccagaagcgtcc 344

                                                                       
Query: 181 ccactggcttacccgatagtgggattttacacggtgtcggctaagggtggctttgtgaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ccactggcttacccgatagtgggattttacacggtgtcggctaagggtggctttgtgaga 284

                                                                       
Query: 241 agaccatttcagaagaagaaacggggctctggctggtggggtagaaacccctatggaatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 agaccatttcagaagaagaaacggggctctggctggtggggtagaaacccctatggaatg 224

                                  
Query: 301 aaaagtactcccagtctctttga 323
           |||||||||||||||||||||||
Sbjct: 223 aaaagtactcccagtctctttga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no488_i20.g1 MSMg01no488_i20.g1 CHROMAT_FILE:
MSMg01no488_i20.g1 PHD_FILE: MSMg01no488_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:30 2005
         (580 letters)



>mm_chr11_119855409_119856388
          Length = 980

 Score = 1075 bits (556), Expect = 0.0
 Identities = 574/580 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttaaatcactgttggcttttctgctctagctgaggtctagactgatgacattctaggga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaaatcactgttggcttttctgctctagctgaggtctagactgatgacattctaggga 260

                                                                       
Query: 61  gggagtaacacagtcctccggcctctggaagggttggctttccatcttcctcagacctga 120
           ||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggaggaacacagtcccccgggctctggaagggttggctttccatcttcctcagacctga 320

                                                                       
Query: 121 ctatgcccatctgaacacctggtggcccatgggctagtgggtctacaagccatgatactg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 ctatgcccatctgaacacctggtggcccacgggctagtgggtctacaagccatgatactg 380

                                                                       
Query: 181 gtgacttctagcctctaaggccggaccatgtcaccagactctggaccttcctggcatact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgacttctagcctctaaggccggaccatgtcaccagactctggaccttcctggcatact 440

                                                                       
Query: 241 gtctattggctgccatagtttggctgtccctgtgaaactggccactctcatcccatgcca 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 gtctattggctgccatagtttggctgtccctgtgaaactgggcactctcatcccatgcca 500

                                                                       
Query: 301 cacttcctaggcagctgtggggtcctgcctagctccaggtgccttcttctcaacccagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttcctaggcagctgtggggtcctgcctagctccaggtgccttcttctcaacccagag 560

                                                                       
Query: 361 ctggtcacatggtgtcctcagagtccttccttgtccccactttttctggtgctatcaagc 420
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 561 ctggtcacatggtgtcctcagagtccttccttgcccccactttttctggtgctatcaagc 620

                                                                       
Query: 421 actaggtttgtggtgactcattaagtctgccattcctggtccctccttgacccctgagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actaggtttgtggtgactcattaagtctgccattcctggtccctccttgacccctgagaa 680

                                                                       
Query: 481 accaacccccttccaccaagtctagtgagtgctccctactaaacacctccccccatgttt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 accaacccccttccaccaagtctagtgagtgctccctactaaacacctccccccatgttt 740

                                                   
Query: 541 tctctctctgctctcttccatcacatacatgttcacgtgt 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tctctctctgctctcttccatcacatacatgttcacgtgt 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)