BAC Information

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BAC

Clone NameMSMg01-488J23
Chromosome11 (Build37)
Map Location 37,282,093 - 37,282,333
singlet/doubletsinglet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148, LOC276941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488J23.T7 (MSMg01no488_j23.b1)MSMg01-488J23.TJ (MSMg01no488_j23.g1)
ACCAG567302AG567303
length726760
length of high quality
(start - end)		609 (62 - 670)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no488_j23.b1 PHD_FILE: MSMg01no488_j23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:36 2005CHROMAT_FILE: MSMg01no488_j23.g1 PHD_FILE: MSMg01no488_j23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATTTCGAGAGGAGGGCGGAATTCTTTGTTC
TTCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCAC
CTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAG
GACAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTG
ACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTT
GTCAGTTCTCGATCTTACAGCACAAGCCATTGTTGTTCTGTTCAGGAATT
TTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATA
AGTTTCAGTATCTCTGGTTTTAAGTGAAGTTCCTTGATCCACTTAGATTT
GATCTTAGTACAAGGAGATAAGTATGGATTGATTCGCAATCTTCTACATG
ATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTC
CACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGT
CTCTATACCAGTACCATGCAGTTTTTATCACAATTGCTCTGTAGTAAAGC
TTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATTCTTGAGAAG
AGTTTTTGCTATCCTAGGTTTTTTGT

CCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTTTCCCTCTTAATAATTTAGAAT
ACCTAATAGCTCTGAAATACATGCTAAGGAAATATTCTGGGAAGCGACAA
GACAACATGTCTTTTAATGGGCTGTTTATTGTTAATTTACAATGTAAGTA
TAGAGTGATTTTCAGGATTATTTAAAAGGAACGATCAGCTTTTAAGAGTT
TATTTTATTTATTTTAAAACTCTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTATTTATTTTNNNCCCTCNNANACCANACTGC
ATNTCATCCCTTGTACCCGTACTTACATCTGATCGTGCGCTTCCCAGTGT
GGTTTTGTGAATTACACCCCCTTTTTGTATTATAGCTGTAGGTACTACTA
AGAACCAAATATATATATACATATATATATATATACATATATATATACAT
ATATATAAAATCTGTCGTTTTATATTTTCTCTAGTGTCTGCCTCTACCCT
ATTTTATCTTATCCATATTATTATCTATGTCCTAATCTACACACTCCATT
ATTTTAATCTTTACACCTGTGCTATGATTCTTTGATATATCTCCAATAAT
ATACGTTCTTTTTTTTTTTTTTCATATAAACCACGAATACCACCCTAAAC
TATTTTCCCTTTTTCCCCCTCATTTATTTGTTCCTCGCCCACCTTTTTTT
CGCCCCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_j23.g1 MSMg01no488_j23.g1 CHROMAT_FILE:
MSMg01no488_j23.g1 PHD_FILE: MSMg01no488_j23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:36 2005
         (245 letters)



>mm_chr11_37281961_37282605
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttccctcttaataatttagaatacctaatagctctgaaatacatgctaaggaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttttccctcttaataatttagaatacctaatagctctgaaatacatgctaaggaaatat 314

                                                                       
Query: 61  tctgggaagcgacaagacaacatgtcttttaatgggctgtttattgttaatttacaatgt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 tctgggaagcaacaagacaacatgtcttttaatgggctgtttattgttaatttacaatgt 254

                                                                       
Query: 121 aagtatagagtgattttcaggattatttaaaaggaacgatcagcttttaagagtttattt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 253 aagtatagagtgattttcaggattatttaaaaggaacgatcagcttttaagagtttatgt 194

                                                                       
Query: 181 tatttattttaaaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 tatttattttaaaactctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 134

            
Query: 241 g 241
           |
Sbjct: 133 g 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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