Query= MSMg01no490_m24.b1 MSMg01no490_m24.b1 CHROMAT_FILE:
MSMg01no490_m24.b1 PHD_FILE: MSMg01no490_m24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:30 2005
(594 letters)
>mm_chr11_87235966_87236959
Length = 994
Score = 1025 bits (530), Expect = 0.0
Identities = 578/594 (97%), Gaps = 2/594 (0%)
Strand = Plus / Plus
Query: 1 gaaaagcaactgcttccaaatatttgtgatttttacagtgtagttttggaaaaactctta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaaagcaactgcttccaaatatttgtgatttttacagtgtagttttggaaaaactctta 260
Query: 61 gcctaccaattcttctaagtgttttaaaatgtgggagccagtatacatgaatttatagag 120
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct: 261 gcctaccaattcttctaagtgttttaaaatgtgggagccagtacacatgaagttatagag 320
Query: 121 tgttttaatgaggcttaaatatttaccgtaactatgaaatgctacgcatatcatgctcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tgttttaatgaggcttaaatatttaccgtaactatgaaatgctacgcatatcatgctgtt 380
Query: 181 caggctccgtggccacgcaactcatacttacctggcaggggagataccatgatcacgaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggctccgtggccacgcaactcatacttacctggcaggggagataccatgatcacgaag 440
Query: 241 gtggttttcctctttgcgaggcttatccattgcactccggatgtgctgacccctgcgatt 300
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggttttcc-cagggcgaggcttatccattgcactccggatgtgctgacccctgcgatt 499
Query: 301 tccccaaatgcgggaaactcgactgcataatttgtggtagtgggggactgcgttcgcgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tccccaaatgcgggaaactcgactgcataatttgtggtagtgggggactgcgttcgcgct 559
Query: 361 ctcccctggtttacttggttttaaaaatagtttgcacttgcgataccgcgaatatggtta 420
|||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct: 560 ctcccctggtttacttggttttaaaaatagcttgcactagcgataccgcgaatatggtta 619
Query: 421 ttaggtttgttaggcgcagttgtgtcttactatagaaaaataacctagtgttcaattttg 480
||||||||||||||| |||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct: 620 ttaggtttgttaggcacagtcgtgtcttactatagaaaaataacgtagtgttca-ttttg 678
Query: 481 ctgcctgtatgtgttaatttgtccttattgcgccattgttcttgttaagtctcctgtaag 540
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 679 ctgcctgtatgtgttaatttgtccttattgcgccattgttcttgttaagtcttctgtaag 738
Query: 541 gagttgcgggtttcaaactgtcagcctgagagcataagctcacttttcagtcag 594
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 739 gagttgcgggtttcaaactgtcagtctgagagcataagctcacttttcagtcag 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_m24.g1 MSMg01no490_m24.g1 CHROMAT_FILE:
MSMg01no490_m24.g1 PHD_FILE: MSMg01no490_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:30 2005
(622 letters)
>mm_chr11_87410328_87411349
Length = 1022
Score = 1172 bits (606), Expect = 0.0
Identities = 618/622 (99%)
Strand = Plus / Minus
Query: 1 cactccctcaccctgcagcactgtgaagggtacctgtaaaggtaagagaaactctcagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 cactccctcaccctgcagcactgtgaagggtacctgtaaaggtaagagaaactctcagcc 763
Query: 61 cacagtccaggctctcccttgttgttctcagcagccctgctctatagcagccctgaggaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 cacagtccaggctctcccttgttgttctcagcagccctgctctatagcagccctgaggaa 703
Query: 121 agggagatgatgcaggatagtcaagtcaggacactggtcatctgctgtgcaggaaaactg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 agggagatgatgcaggatagtcaagtcaggacactggtcatctgctgtgcaggaaaactg 643
Query: 181 cctctccccttccctgaggccaaaggctccaataacacagactgacaaatacaggagccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 cctctccccttccctgaggccaaaggctccaataacacagactgacaaatacaggagccc 583
Query: 241 acccccttcacatgttcaggaggaggaagccagggctctggtagatcctctaaagattta 300
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acccccttcacaggcccaggaggaggaagccagggctctggtagatcctctaaagattta 523
Query: 301 aaagtctggaacacaaactgggcaggaagcccctcccaccatgagcctcctgttctcctt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 aaagtctggaacacaaactgggcaggaagcccctcccaccatgagcctcctgttctcctt 463
Query: 361 acctgaagattctcctcctccttcaccagttccttgggggggaacagatccttggcttgg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 acctgaagattctcctcctccttcaccagttccttgggggggaacagatccttggcttgg 403
Query: 421 atgtactccaggctgggggggccctcctcaccctgcagggaggccataaccttgagtttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 atgtactccaggctgggggggccctcctcaccctgcagggaggccataaccttgagtttg 343
Query: 481 ccaccccacctggctcctaaggctcattcactttgctcctctaccaacaaacctacagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ccaccccacctggctcctaaggctcattcactttgctcctctaccaacaaacctacagac 283
Query: 541 accttcctttgttttaaaggagacctggcttggctggaggaggagtagaataaagtggta 600
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 282 accttcctttgttttaaaggagacctgacttggctggaggaggagtagaataaagtggta 223
Query: 601 ctcagggaaacgtgaactaagc 622
||||||||||||||||||||||
Sbjct: 222 ctcagggaaacgtgaactaagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
