Query= MSMg01no491_d07.b1 MSMg01no491_d07.b1 CHROMAT_FILE:
MSMg01no491_d07.b1 PHD_FILE: MSMg01no491_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:03 2005
(284 letters)
>mm_chr11_63800996_63801679
Length = 684
Score = 497 bits (257), Expect = e-145
Identities = 275/281 (97%), Gaps = 1/281 (0%)
Strand = Plus / Plus
Query: 1 atattaagaatatgaatttaactggacataccaacgacaggggtattactaaactacctc 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 atattaagaatatgaatttaactggacataccaacgacaggggtattactgaactacctc 260
Query: 61 catatgaggcacattgggaattcgaactggaaaacctcaaggtgatgcagacagtagatt 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatgaggcacattgggaattcaaactggaaaacctcaaggtgatgcagacagtagatt 320
Query: 121 ataggtgcctatatctctctgcattctcagaaaacaaggaaaaacagagagcttcaactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ataggtgcctatatctctctgcattctcagaaaacaaggaaaaacagagagcttcaactc 380
Query: 181 tgacagaacaatgaaacgatgctgaggaagacctgccagatggggaggagaggagaggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacagaacaatgaaacgatgctgaggaagacctgccagatggggaggagaggagaggag 440
Query: 241 acaggaggagtgggtagggaaagggagggngaggggggaga 281
|||||||||| ||| |||||||||||||| |||| ||||||
Sbjct: 441 acaggaggagagggaagggaaagggaggg-gaggtgggaga 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no491_d07.g1 MSMg01no491_d07.g1 CHROMAT_FILE:
MSMg01no491_d07.g1 PHD_FILE: MSMg01no491_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:03 2005
(580 letters)
>mm_chr11_63952481_63953459
Length = 979
Score = 996 bits (515), Expect = 0.0
Identities = 548/565 (96%), Gaps = 11/565 (1%)
Strand = Plus / Minus
Query: 16 acacagagaaaccctctctcgaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaac 75
||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 979 acacagagaaaccctgtct----------caaaacaaaacaaaacaaaacaaaacaaaac 930
Query: 76 aaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacagggctatataaacttcagg 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 aaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacagggctatataaacttcagg 870
Query: 136 gaatggatagaggttttcatagtgattatacattattgactggggctgaggggctgggag 195
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 gaatgggtagaggttttcatagtgattatacattattgactggggctgaggggctgggag 810
Query: 196 tgcttcatttgcatgaagaggaattccaggtgctgaaagttgtaatttggccaagatatt 255
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 809 tgcttcatttgcatgaagaggaattccaggtgctgaaagttgtaatttggccaagaaatt 750
Query: 256 atgtaccttcctcaagaagggtgaaagtggaggttgtacaggactacatgtactggggca 315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 atgtaccttcctcaagaagggtgaaagtggaggttgtacaggactacatgtactggggca 690
Query: 316 tgtaggcgtggaacagggaaagagcgatccttacactggccagtctcaagatgagatttc 375
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 689 tgtaggcgtggaacagggaaagagcgatccttactctggccagtctcaagatgagatttc 630
Query: 376 tggggttttagacttctctcagctccactcttgctccagatcagctcccctggttgcatg 435
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 629 tggggttttagacttctctcagctccactcttgctccagatcagctcccttggttgcatg 570
Query: 436 gcttacctgcccacatttcctttctcttttacaaaggggagatgtcatcacagccctcag 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gcttacctgcccacatttcctttctcttttacaaaggggagatgtcatcacagccctcag 510
Query: 496 cctctgttttgggaatggtttggcactaaaccagagccttattggcagtgttttttttac 555
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 509 cctctgttttgggaatggtttggcactaaaccagagccttattggcagtggtttttt-ac 451
Query: 556 aatactacttatctgccattttaga 580
|||||||||||||||||||||||||
Sbjct: 450 aatactacttatctgccattttaga 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 20
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
