BAC Information

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BAC

Clone NameMSMg01-492C17
Chromosome11 (Build37)
Map Location 69,689,053 - 69,689,365
singlet/doubletsinglet
Overlap genenone
Upstream gene9930039A11Rik, Rpl26, Odf4, Arhgef15, Slc25a35, 2400006H24Rik, Pfas, 1500010J02Rik, Aurkb, 2310047M10Rik, Tmem107, Vamp2, Per1, Hes7, Aloxe3, Alox12b, Alox8, Gucy2e, Cntrob, Trappc1, Kcnab3, A030009H04Rik, Chd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1
Downstream geneLOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492C17.T7 (MSMg01no492_c17.b1)MSMg01-492C17.TJ (MSMg01no492_c17.g1)
ACCAG569989AG569990
length744726
length of high quality
(start - end)		---309 (321 - 629)
definitionCHROMAT_FILE: MSMg01no492_c17.b1 PHD_FILE: MSMg01no492_c17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:19 2005CHROMAT_FILE: MSMg01no492_c17.g1 PHD_FILE: MSMg01no492_c17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGNGACTACGCGG
NAATCAATTCAGGTACCAAAAAGAGAGCAATCAGTGCTCTTAACTGCTGA
GCCACCTCTCTAGCCCCCCTACACGACATTCTTGGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGNGNGNGNNNTTNNNNNTNNNNNNNNNNNA
ATTTTTTTTTTTTNTTTTTTNTTNTTTTNTTTTTTTTTTTTTTTTTNNNN
TTTTTTNTTTTTTTGNNTTTTNTTTTTTAATTNGGTTTTGGGGNGGGGGG
GTTTAGGTGGTTANGNNNGNGGGNAGGGTGGGGGGGAGATAAAATAAAAT
AAAAAACCCAACAACCTAAAAAAAAAACTAACTAATACATAAAAAAAAAA
AATAAAAAAAAAAAAAAAATAAAAATAAACAAAACAAAAATAAAAACAAC
ACTAAACAAAAAAAAACAATAACATAAAATAAAAAAAAAAATAATTATAT
AATATAAAAATAATACAAATAAAAAAACTATCAAATAAACAATAACAATA
TTATAACATTAACAAAACCCAAAAAAAACAAAAACATAAAATAAAAAAAA
AACAAAAAAAAAAATTAAACCAAATAAAAAAAAATATTTAAATAATTAAC
AATCAAAAAATAAAATAATAAATAACATATAATAAATAAATAATTCAACA
AAATCATCTAACAAACAATAAACAAACAAAAAAATTATACAAAA

ATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAGGAATTCTAGTTAGAGGTGCCCCCCCC
ACCCCAATAGATATTTAGCAATGTCTGGAGTCAGTTTTGTTTTAATTGGA
GGAATGTGTGGCTGGCGCTAGTGGGTGGAGACCAAGGCCGCTTGCTAGAC
ATCCTGGGACACACAGGAAAATCCTGTCCTAATGTCAACAATTTATGGTG
GAGGAATTCTGGTGGTACCGGTCTTCTCTGTATCGGGGGCTTGGGGTTTG
GATGACAGGATATTTTTTTATGAAGACATAAGTTCTCGTGGGAGCACTGG
GAGCTTTTCATATGGGATCCCAGCCTCCATCTACTTTTCAAACTGGGTGT
CCGGAGGGCACACTTGGAGTGGCTTGGACAGCCTCTAAACAGCCTGCTTG
TGTCCCCCCCCCCGGGTGAGTAAAATCGTCCCATGTGAAGCCTTGGTTAG
TATGATGCATCCACAACCCGGTTAGAACCACTGGGGTCAACATGCCTTTC
CTCTTTAACTTTTGAGATAGGGTTCCTTTGTGAGTCAGGGTTTCTCTGTG
TAACAGTCTTGGCTGTCCTGGAACTCACTTCGTAGACCAGGTTGGCCTCA
AACTCACAGAGATATCTGCCTGCCTCTGCCTCTAGAGGTGCTGGGATTAA
AATTGGGGGCCAGCTCCAAATTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_c17.g1 MSMg01no492_c17.g1 CHROMAT_FILE:
MSMg01no492_c17.g1 PHD_FILE: MSMg01no492_c17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:19 2005
         (309 letters)



>mm_chr11_69688906_69689618
          Length = 713

 Score =  578 bits (299), Expect = e-169
 Identities = 308/313 (98%), Gaps = 4/313 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagacataagttctcgtgggagcactgggagcttttcatatgggatcccagcctccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tgaagacataagttctcgtgggagcactgggagcttttcatatgggatcccagcctccat 401

                                                                       
Query: 61  ctacttttcaaactgggtgtccggagggcacacttggagtggcttggacagcctctaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctacttttcaaactgggtgtccggagggcacacttggagtggcttggacagcctctaaac 341

                                                                       
Query: 121 agcctgcttgtgt----ccccccccccgggtgagtaaaatcgtcccatgtgaagccttgg 176
           |||||||||||||    |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 agcctgcttgtgtccccccccccccccgggtgagtaaaatcgtcccatgtgaagccttgg 281

                                                                       
Query: 177 ttagtatgatgcatccacaacccggttagaaccactggggtcaacatgcctttcctcttt 236
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 280 ttagtatgatgcatccacaacctggttagaaccactggggtcaacatgcctttcctcttt 221

                                                                       
Query: 237 aacttttgagatagggttcctttgtgagtcagggtttctctgtgtaacagtcttggctgt 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aacttttgagatagggttcctttgtgagtcagggtttctctgtgtaacagtcttggctgt 161

                        
Query: 297 cctggaactcact 309
           |||||||||||||
Sbjct: 160 cctggaactcact 148


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 713
Length adjustment: 9
Effective length of query: 300
Effective length of database: 704
Effective search space:   211200
Effective search space used:   211200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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