Query= MSMg01no493_e16.b1 MSMg01no493_e16.b1 CHROMAT_FILE:
MSMg01no493_e16.b1 PHD_FILE: MSMg01no493_e16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:46 2005
(256 letters)
>mm_chr11_30247622_30248277
Length = 656
Score = 480 bits (248), Expect = e-140
Identities = 251/252 (99%)
Strand = Plus / Minus
Query: 5 gaattctttgtttagctctgtgccccatttttaataggataatttgattttctggagtcc 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 558 gaattctttgtttagctctgtgccccatttttaataagataatttgattttctggagtcc 499
Query: 65 accttcttgagttctttatatatattgtatattagtaccctaaagtaatatttttctacc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 accttcttgagttctttatatatattgtatattagtaccctaaagtaatatttttctacc 439
Query: 125 aagacatatcagctaattcagggaaacttacagtaaataagtacttaatgagttagagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagacatatcagctaattcagggaaacttacagtaaataagtacttaatgagttagagtt 379
Query: 185 ttcactctctttaaaagtataacattttattaaattatctatatgtgttgtgatgttcac 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ttcactctctttaaaagtataacattttattaaattatctatatgtgttgtgatgttcac 319
Query: 245 tttgtggttcct 256
||||||||||||
Sbjct: 318 tttgtggttcct 307
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space: 159809
Effective search space used: 159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no493_e16.g1 MSMg01no493_e16.g1 CHROMAT_FILE:
MSMg01no493_e16.g1 PHD_FILE: MSMg01no493_e16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:46 2005
(658 letters)
>mm_chr11_30088865_30089923
Length = 1059
Score = 1236 bits (639), Expect = 0.0
Identities = 654/663 (98%), Gaps = 9/663 (1%)
Strand = Plus / Plus
Query: 1 agaagatgatattacataccctgggccaccatgtggatgctgggaactgaacttaggtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagatgatattacataccctgggccaccatgtggatgctgggaactgaacttaggtca 260
Query: 61 tcacaagagtgacaaatacaagctaggtggtggtggcgcatgcctttaatcccagcactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaagagtgacaaatacaagctaggtggtggtggcgcatgcctttaatcccagcactt 320
Query: 121 gggaagcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagtgagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggaagcagaggcaggcagatttctgagttcgaggccagcctggtctacaaagtgagttc 380
Query: 181 ctggacagccagggctatacaaagaaaccctgtctcgaaaaaaacaaaaaacaaaaacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctggacagccagggctatacaaagaaaccctgtctcgaaaaaaacaaaaaacaaaaacca 440
Query: 241 aaaaccattttaaaaaa----gagagagagagagagtgactagtgctcttgactgctgaa 296
||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaacca----aaaaaaaaaagagagagagagagagtgactagtgctcttgactgctgaa 496
Query: 297 ccatgtctccagccccaagaataattctgtaattctcctctaataccaagtgggtaagta 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ccatgtctccagccccaagaataattctgtaattctcctctaataccaagtgggtaagta 556
Query: 357 aagtggaattttaaaaaatctcaccaatttctttaactgcagaatttaaaagttaaaaaa 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagtggaattttaaaaaatctcaccaatttctttaactgcagaatttaaaagttaaaaaa 616
Query: 417 aaaaaa-tcccagccaaaatgatgctaagacttacaaagctaagaactagccattttttt 475
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaaaaaatcccagccaaaatgatgctaagacttacaaagctaagaactagccattttttt 676
Query: 476 taatcctttaatttggccagatgtgttcaagcttgtctttaatcccaacacttagcaggc 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 taatcctttaatttggccagatgtgttcaagcttgtctttaatcccaacacttagcaggc 736
Query: 536 agaggtgagcagatttctgtgagtttgaggccagcctggcctacagagtgcgttctacca 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 agaggtgagcagatttctgtgagtttgaggccagcctggcctacagagtgcgttctacca 796
Query: 596 agccagccaccaactacatagtgagatccattcaatcaatcaatacatacatgcacaagt 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 agccagccaccaactacatagtgagatccattcaatcaatcaatacatacatgcacaagt 856
Query: 656 ttt 658
|||
Sbjct: 857 ttt 859
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1059
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1049
Effective search space: 679752
Effective search space used: 679752
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
