Query= MSMg01no493_j16.b1 MSMg01no493_j16.b1 CHROMAT_FILE:
MSMg01no493_j16.b1 PHD_FILE: MSMg01no493_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:12 2005
(634 letters)
>mm_chr11_93387054_93388085
Length = 1032
Score = 1154 bits (597), Expect = 0.0
Identities = 617/625 (98%), Gaps = 6/625 (0%)
Strand = Plus / Minus
Query: 5 gaattctttcggt--ttccagctgcctgttttcctgaggtgatcaatctccaaaaaaagt 62
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaattctttcggtgat--cagctgcctgttttcctgaggtgatcaatctccaaaaaaagt 727
Query: 63 ttccaaactgtgttaaaactgccagtgtcttagcaaacagcacagcgtgtgctttccagg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttccaaactgtgttaaaactgccagtgtcttagcaaacagcacagcgtgtgctttccagg 667
Query: 123 gagagaagctcaataattaaaatgagccagcaccgaggaactggagggcggtttgatcta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gagagaagctcaataattaaaatgagccagcaccgaggaactggagggcggtttgatcta 607
Query: 183 gtttagaagctgacattttcttagcagaaaaaaaaaatgcaatatccataatacattatt 242
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 606 gtttagaagctgacattttcttagcag-aaaaaaaaatgcaatatccataatacattatt 548
Query: 243 ttgtgcccaatgaagtcaactagaacagaattgtctcaggagaaaccaagatcagattgc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ttgtgcccaatgaagtcaactagaacagaattgtctcaggagaaaccaagatcagattgc 488
Query: 303 cagaaaacctttttgaaggcagtaggaaagccagtcttcagaagcccaaacagggagcgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cagaaaacctttttgaaggcagtaggaaagccagtcttcagaagcccaaacagggagcgg 428
Query: 363 gctcaaggccacttctcaagtgcctgcagggtggagaggtttcctgggctgccttgacac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gctcaaggccacttctcaagtgcctgcagggtggagaggtttcctgggctgccttgacac 368
Query: 423 tggatcccctccctgtaaaactttaaagggcaaataaacactgagtaactcctaggttgc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tggatcccctccctgtaaaactttaaagggcaaataaacactgagtaactcctaggttgc 308
Query: 483 ctgaacatctggaccttgaaagtcctgcctctgtcctcattgcccacagacagacttgct 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctgaacatctggaccttgaaagtcctgcctctgtcctcattgcccacagacagacttgct 248
Query: 543 caacagattgcctatattctaggggtgaggtttgcatgcacctggtgtgtgtgtgtgtgt 602
| |||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 247 cgacagat-gcctatattctaggggtgaggtttgcatgcgcctggtgtgtgtgtgtgtgt 189
Query: 603 gtgtgtgtgtgtgtgtgtgtgtgtg 627
|||||||||||||||||||||||||
Sbjct: 188 gtgtgtgtgtgtgtgtgtgtgtgtg 164
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1032
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1022
Effective search space: 637728
Effective search space used: 637728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_j16.g1 MSMg01no493_j16.g1 CHROMAT_FILE:
MSMg01no493_j16.g1 PHD_FILE: MSMg01no493_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:13 2005
(334 letters)
>mm_chr11_93222392_93223123
Length = 732
Score = 571 bits (295), Expect = e-167
Identities = 323/335 (96%), Gaps = 6/335 (1%)
Strand = Plus / Plus
Query: 1 gatgattatggaacttgtttcacagaggtcagtgttgacaacaggctacagaacctgaag 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 gatgattatggaacttgtttcacagaggtcagtgttgacaatgggctacagaacctgaag 260
Query: 61 ttttctgctcagtcagtacatacacaccccc--aacaaccttttgttgtctgtcttagca 118
||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 ttttctgctcagtcagtacatacacac----ttaacaaccttttgttgtctgtcttagca 316
Query: 119 gtgaggtgcttactaaatctactaatgagctctgtctttaagtcctccccaacacccatg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gtgaggtgcttactaaatctactaatgagctctgtctttaagtcctccccaacacccatg 376
Query: 179 gcataatcaccaaaattctggtgaacatacatgtgcctagacatgggactcaagagagca 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 377 gcataatcaccaaaattctggtgagcatacatgtgcctagacatgggactcaagagagca 436
Query: 239 gagctctggtaagcactcaagagtcccttcttcaagaaacccatgatcttgccagggata 298
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gagttctggtaagcactcaagagtcccttcttcaagaaacccatgatcttgccagggata 496
Query: 299 ttttgctgagttctgaacaatacctctgtggagtg 333
|||||||||||| ||| ||||||||||||||||||
Sbjct: 497 ttttgctgagttatgatcaatacctctgtggagtg 531
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 732
Length adjustment: 9
Effective length of query: 325
Effective length of database: 723
Effective search space: 234975
Effective search space used: 234975
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
