Query= MSMg01no494_a05.b1 MSMg01no494_a05.b1 CHROMAT_FILE:
MSMg01no494_a05.b1 PHD_FILE: MSMg01no494_a05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:45 2005
(136 letters)
>mm_chr11_88023460_88024002
Length = 543
Score = 221 bits (114), Expect = 2e-62
Identities = 135/142 (95%), Gaps = 7/142 (4%)
Strand = Plus / Plus
Query: 2 ttatttg-a-aaacggggaag-ctctgttggca-aag-catcattttaagaa-agttcga 55
||||||| | ||||||||||| ||||||||||| ||| |||||||||||||| |||||||
Sbjct: 202 ttatttgtagaaacggggaaggctctgttggcagaaggcatcattttaagaagagttcga 261
Query: 56 gaagcaaggactgtga-tacctaattgtcaaagctgttcttgttgggccggggtgtagct 114
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gaagcaaggactgtgagtacctaattgtcaaagctgttcttgttgggccggggtgtagct 321
Query: 115 ccatagtaacatgtgtgctcac 136
||||||||||||||||||||||
Sbjct: 322 ccatagtaacatgtgtgctcac 343
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 2
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 543
Length adjustment: 8
Effective length of query: 128
Effective length of database: 535
Effective search space: 68480
Effective search space used: 68480
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no494_a05.g1 MSMg01no494_a05.g1 CHROMAT_FILE:
MSMg01no494_a05.g1 PHD_FILE: MSMg01no494_a05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:45 2005
(552 letters)
>mm_chr11_88187775_88188726
Length = 952
Score = 1067 bits (552), Expect = 0.0
Identities = 552/552 (100%)
Strand = Plus / Minus
Query: 1 cttgacctagagaaagtagacactactactgttattaacatgacttattgccactgccgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 cttgacctagagaaagtagacactactactgttattaacatgacttattgccactgccgg 693
Query: 61 gtctttcctagccaaggaataggaaggcagagagcactctcttcttccttccagcctgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 gtctttcctagccaaggaataggaaggcagagagcactctcttcttccttccagcctgtg 633
Query: 121 aactggggtgcccgctgctagctgttaggattttaaattgtgtttctgtgctagttggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 aactggggtgcccgctgctagctgttaggattttaaattgtgtttctgtgctagttggca 573
Query: 181 agttgctaccctgaacccttaaagagactctcatgacctctggactctcccctgagcaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 agttgctaccctgaacccttaaagagactctcatgacctctggactctcccctgagcaga 513
Query: 241 gttggtacccaaagcatcctgtctagagactcgaggatggagagtcttcatgctttaggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 gttggtacccaaagcatcctgtctagagactcgaggatggagagtcttcatgctttaggg 453
Query: 301 gaatggggctggagctccagatgtccacttacggagctggtgaaggggccgaggtcagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gaatggggctggagctccagatgtccacttacggagctggtgaaggggccgaggtcagag 393
Query: 361 ctggagcttccagagagcagaaagttctgggtgtccagcacttgctatcctgggctgcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ctggagcttccagagagcagaaagttctgggtgtccagcacttgctatcctgggctgcag 333
Query: 421 aggtgactcagtagggctcaatggcagccttgcagaggtaggtctgttcaaccctatagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aggtgactcagtagggctcaatggcagccttgcagaggtaggtctgttcaaccctatagg 273
Query: 481 aagaaactaggaccaaacatatcaaataaaaatggttcaggttgggaaaaaaaacatgat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aagaaactaggaccaaacatatcaaataaaaatggttcaggttgggaaaaaaaacatgat 213
Query: 541 ctcggctttctc 552
||||||||||||
Sbjct: 212 ctcggctttctc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
