BAC Information

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BAC

Clone NameMSMg01-494A22
Chromosome11 (Build37)
Map Location 99,583,442 - 99,584,115
singlet/doubletsinglet
Overlap genenone
Upstream geneThrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922
Downstream geneLOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494A22.T7 (MSMg01no494_a22.b1)MSMg01-494A22.TJ (MSMg01no494_a22.g1)
ACCAG571427AG571428
length757753
length of high quality
(start - end)		681 (27 - 707)674 (70 - 743)
definitionCHROMAT_FILE: MSMg01no494_a22.b1 PHD_FILE: MSMg01no494_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:48 2005CHROMAT_FILE: MSMg01no494_a22.g1 PHD_FILE: MSMg01no494_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:18:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCATTTATTTCCTG
TGTTTTCTTGAGTGTAGTTAACTTCCATGGGTTGGAGTTTTTTGTTTACT
ATCTTCTGTAGAACTGGATTTATGGATAAATGTGTCTAAATTTGGTTTTG
TTGTAGAATATCTTTTTTCTCCATCTATTGTGATTGAAAATTTTGCTGGG
CAAAGTAGCCTGGGCTAACATCTGTGGTTTCTTAGAGTTTGCAAGACATC
TGCCTAGGCCCCTCTAGCTTTTAAAGTCTTTGTTGAGAAGTCAGGTGGAA
TTTTAATGCATTTACCTTCATGTGTCCAGTTCCTTTGCAGCTTTTAATAT
TCTTTCTTTGTTCTACACATTTAGTATTTTGATTATTATATGGTGGGAAT
GTTATCTTTCCTGGTTCAATCTATTTGGTGTTCTGTAAGCTTCTTGTATG
TTTATAGGCATTTCTTTATTTAGGGCATGAAATTTTTGTGTGTGTGTGAT
TTTGTGGAAAATATTTTCTGGGCTTTTGAGTTGGGAATCTTCTTCTAGTC
CCTTCTAATAATAATTCTTAGGTTTGGTCTTTTTATAGTGTCAAAGATTT
CATGAGTGTTTTGTGTCAAGAACATTTTAGATGTATTATTTTCTTTGACC
AATTTATCAATATCTTCTATGCCTAAGATTCTCTCATACATCTCTTGATT
TTTGTTGGTGATGTTTGTTTTGGGAATTCTTGTTCAGTTACTTGGATTTT
CTATCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCTTANAATGTTTATTAGATGCCAAGAAGAAAAGGAGAGAAA
TCCACACACTCGCATACACAAACTTGAAACAATGCACTTTTGTAGAAGCC
ATTCCCATGATCATCTCTAACAATTTCACTTATTGGCATGCACACAGACA
CATCCATCCATACATACATACTTACAAACATGCATACATACATAGACACA
TATGTCCATATATACATTCACATATATACATTCATAAAAAACAGACAAAT
AGACAAACAGAGCAGCTGACCTACAGACATTCACACACTGGGTGGATCAA
GCAAAGCTTTAGTGACCATGCTTTTCCAGGTTTACATACATGCACATAGA
TGCAGTTGGTGGATAAAGCAAAGCTGTAGTGAGCATGTCCTCCCAACTTT
ATTTTTTCTCTTATCCTATTCATACTGCCTAAGAAAAAGTTCTCAACATA
CTAAGAAGTATTGCCTCACTCACAAAAGAGGTAAAATTGTTTCACAGAAG
GGAGGTGAAACAAAATTTTTGGTTACATGTTTTTGTATTAAAACTCCTAC
ATGACTAATTGGTTTTTATGTATCTTTTATTTTGCAAGTTCAGTATGAGT
TCAAAGCAGTAGTTTTATCTATCTTTTATTGTATATGCTCATTATGAGTC
CAAAGTAATAGTTTTGTCTATCTTTTGTTCCTTGTATTAATTATAAGTTG
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_a22.g1 MSMg01no494_a22.g1 CHROMAT_FILE:
MSMg01no494_a22.g1 PHD_FILE: MSMg01no494_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:48 2005
         (674 letters)



>mm_chr11_99583242_99584315
          Length = 1074

 Score = 1265 bits (654), Expect = 0.0
 Identities = 669/674 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttattagatgccaagaagaaaaggagagaaatccacacactcgcatacacaaacttgaaa 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattagatgccaaggagaaaaggagagaaatccacacactcgcatacacaaacttgaaa 260

                                                                       
Query: 61  caatgcacttttgtagaagccattcccatgatcatctctaacaatttcacttattggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatgcacttttgtagaagccattcccatgatcatctctaacaatttcacttattggcat 320

                                                                       
Query: 121 gcacacagacacatccatccatacatacatacttacaaacatgcatacatacatagacac 180
           |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gcacacagacacatccatccatccatccatacttacaaacatgcatacatacatagacac 380

                                                                       
Query: 181 atatgtccatatatacattcacatatatacattcataaaaaacagacaaatagacaaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatgtccatatatacattcacatatatacattcataaaaaacagacaaatagacaaaca 440

                                                                       
Query: 241 gagcagctgacctacagacattcacacactgggtggatcaagcaaagctttagtgaccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcagctgacctacagacattcacacactgggtggatcaagcaaagctttagtgaccat 500

                                                                       
Query: 301 gcttttccaggtttacatacatgcacatagatgcagttggtggataaagcaaagctgtag 360
           ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 501 gcttttccaagtttacatacatgcacatacatgcagttggtggataaagcaaagctgtag 560

                                                                       
Query: 361 tgagcatgtcctcccaactttattttttctcttatcctattcatactgcctaagaaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagcatgtcctcccaactttattttttctcttatcctattcatactgcctaagaaaaag 620

                                                                       
Query: 421 ttctcaacatactaagaagtattgcctcactcacaaaagaggtaaaattgtttcacagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctcaacatactaagaagtattgcctcactcacaaaagaggtaaaattgtttcacagaa 680

                                                                       
Query: 481 gggaggtgaaacaaaatttttggttacatgtttttgtattaaaactcctacatgactaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gggaggtgaaacaaaatttttggttacatgtttttgtattaaaactcctacatgactaat 740

                                                                       
Query: 541 tggtttttatgtatcttttattttgcaagttcagtatgagttcaaagcagtagttttatc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtttttatgtatcttttattttgcaagttcagtatgagttcaaagcagtagttttatc 800

                                                                       
Query: 601 tatcttttattgtatatgctcattatgagtccaaagtaatagttttgtctatcttttgtt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tatcttttattgtatatgctcattatgagtccaaagtaatagttttgtctatcttttgtt 860

                         
Query: 661 ccttgtattaatta 674
           ||||||||||||||
Sbjct: 861 ccttgtattaatta 874


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space:   706496
Effective search space used:   706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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