Query= MSMg01no495_h09.b1 MSMg01no495_h09.b1 CHROMAT_FILE:
MSMg01no495_h09.b1 PHD_FILE: MSMg01no495_h09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:32 2005
(485 letters)
>mm_chr11_96566983_96567865
Length = 883
Score = 911 bits (471), Expect = 0.0
Identities = 481/485 (99%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 1 taggcagcagagatgaatgccacaccaagcctagcttgagcatatatgagacctcaaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggcagcagagatgaatgccacaccaagcctagcttgagcatatatgagacctcaaagg 260
Query: 61 tcttcccccacagtgacacacttcccttaaacaagaccacaaaaaggccacacctactac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcccccacagtgacacacttcccttaaacaagaccacaaaaaggccacacctactac 320
Query: 121 aacaaggccacacctctcaatagtgcctctccctatggaccaagcattcaaacacttgag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaaggccacacctctcaatagtgcctctccctatggaccaagcattcaaacacttgag 380
Query: 181 tcaagggagccattcctattcaaactgccacaaaggccaactccctgagagaggagaaac 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 tcaagggagccattcctattcaaactgccacaaaggccaactccctgggagaggagaaac 440
Query: 241 ccttcttcagattaggatccagaggaagaggagctaagtgttggaagggggctcccttgg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccttcttcagattaggatccagaggaagaggagctaagtgttggaagggggctcccttgg 500
Query: 301 actctcccaccttcatgcagaggccagtggtagccctactaaaaaggcctctgatttacc 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actctcccaccttc--gcagaggccagtggtagccctactaaaaaggcctctgatttacc 558
Query: 361 ctccagtctgttctgtttcgcttgcttcctttctaaactgtattctcctagcctggaaaa 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 cttcagtctgttctgtttcgcttgcttcctttctaaactgtattctcctagcctggaaaa 618
Query: 421 cagtctccccccacctttgatacaagggcagaaagagctgcagttttgatggtgacctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 cagtctccccccacctttgatacaagggcagaaagagctgcagttttgatggtgacctgg 678
Query: 481 gaccc 485
|||||
Sbjct: 679 gaccc 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 883
Length adjustment: 10
Effective length of query: 475
Effective length of database: 873
Effective search space: 414675
Effective search space used: 414675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no495_h09.g1 MSMg01no495_h09.g1 CHROMAT_FILE:
MSMg01no495_h09.g1 PHD_FILE: MSMg01no495_h09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:20:32 2005
(668 letters)
>mm_chr11_96609652_96610719
Length = 1068
Score = 756 bits (391), Expect = 0.0
Identities = 400/405 (98%), Gaps = 4/405 (0%)
Strand = Plus / Minus
Query: 1 aagaccatcctgggttacaaagtgaaacactgtctcaa----aaacaaacaaacaaaatc 56
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 405 aagaccatcctgggttacaaagtgaaacactgtctcaaaaacaaacaaacaaacaaaatc 346
Query: 57 aaaagccaaactaccaccaacaaaagaaacctaaaaccaccccctccccaaatcaaaaca 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aaaagccaaactaccaccaacaaaagaaacctaaaaccaccccctccccaaatcaaaaca 286
Query: 117 cgtatacacatgatcacacccaacgcaaaagcggtagaggataggaaagctgctcaatag 176
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 285 cgtatacacatgatcacacccaacgcaaacgcggtagaggataggaaagctgctcaatag 226
Query: 177 ctgaagtgcctctctttcaaatatgaagacctgagttccaatcttcagcgtccatataaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 ctgaagtgcctctctttcaaatatgaagacctgagttccaatcttcagcgtccatataaa 166
Query: 237 tgccaggtgggcacagcagctgctggtaatcccagcacacgggaagcagaagcagaaggc 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tgccaggtgggcacagcagctgctggtaatcccagcacacgggaagcagaagcagaaggc 106
Query: 297 cagctagatgctctgggctcaagggaggccctgcctcaatgcgtaacatagaaatcaatc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 cagctagatgctctgggctcaagggaggccctgcctcaatgcgtaacatagaaatcaatc 46
Query: 357 aagaaagatacccagagccggttgtggtggtccacacctttagtc 401
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 aagaaagatacccagagccggttgtggtggtccacacctttagtc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space: 696164
Effective search space used: 696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
