BAC Information

Click to search

BAC

Clone NameMSMg01-496I21
Chromosome11 (Build37)
Map Location 3,046,762 - 3,047,330
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604
Downstream geneLOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-496I21.T7 (MSMg01no496_i21.b1)MSMg01-496I21.TJ (MSMg01no496_i21.g1)
ACCAG573332AG573333
length765765
length of high quality
(start - end)		685 (48 - 732)629 (75 - 703)
definitionCHROMAT_FILE: MSMg01no496_i21.b1 PHD_FILE: MSMg01no496_i21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:55 2005CHROMAT_FILE: MSMg01no496_i21.g1 PHD_FILE: MSMg01no496_i21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:21:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCCAGCATCCACATGGTGGCTCACAACCATCTGTAATAGGATCC
AATGCCCTCTTCTGTGTCTGAAGACAGCTACAGTGCACTCATATACATTA
AATAAATAAATCAATACATAAATCTTTTTTAAATTTTATTTTTAGTTATG
TGCATGTCTATTCTGTATATCTATGCAGAGTCTGTGCAGTGTCTGAGTAA
GCCCAAAGAGGACCTGAAATTACAGGACTGTGAGTGGCCTGACCTGGGTG
TTGGCAGCTGTCCACAGAGGTCAAAAGAAGGCATAGGGCCTGCTGGGATT
GGAATTTCAGATGGCTCAGAACCACCATGTGGGGGCTGGGAATCAAACCC
GGGCGCTCTTAAGTGCAGAGCCCTTTCCAGCTTGCTGTCTGTCTGCCTAC
CTGCCTGCCTGCCTGCCTGCCTGTCTGTCTGTCTGTCTGAGACAGGGTCT
CAGACAGTCATCGTTGGACTGGCTTCAACTATGTAGACTAGGCTGGCCTG
ATGTGTGTAAACTAGTTTGGCCTTTAGACTCAGCAGAGATTGACCTGCCT
CTGCCACTAGAGTGCTAGAATTAAACATGTGTGTCACCAAACCCAGCTTC
AGTTAAATACACACACACACACACATACACACACACACATATTCTTACTC
ATTTGTGTCTAGAAAAATAACACTGCATACGATTAAAGATGCAAATAGTT
TCATGTTTCACATTG

NCGATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTC
TGTTTTACGGGAACACTTATGACCGTGACCCGCAGTTCTGGTTCCGGAAT
GAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCAGGTTTTCTTGTC
CCGGGTTATCTCGTCCCAGGTCTTCTCGTCCCGGGTTTCGGCACAAACTC
TTACACGCATTCACGAAACTGGCCAGGAAGAATGCAACAAACCGGAATCT
TCTGCGGCAAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGCAAGAGT
GCAAGAGTGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGAGCAAGA
AAGCAAGAAAAAGAACAAGAAAAAGAAAGCAAGAGAAAGAATGGCAAAAC
CCTGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCT
GATTGGCTGCAGCCCATCGGCCCAATTGTCATCATGGGAAAGGCAGAACA
CATGGCGGGAAAACTGCCCCTGCACGTGTGCAGACTATGTTTACCACTTA
GAACACAGCTGTCAGCGCCATCTTATAATGGCAAATGTGAGGGCGGCTCC
TCACAAATTACGGAAAATGAGAAAACACACGTTAGGACGTGAAATATGGC
GAGGAAAACTGAAAAAGGTGGAAAATTTAGAAATGTCCACAGTANGACAT
GGAATATGGCAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no496_i21.b1 MSMg01no496_i21.b1 CHROMAT_FILE:
MSMg01no496_i21.b1 PHD_FILE: MSMg01no496_i21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:21:55 2005
         (685 letters)



>mm_chr11_3046762_3047846
          Length = 1085

 Score =  977 bits (505), Expect = 0.0
 Identities = 557/577 (96%), Gaps = 8/577 (1%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcccagcatccacatggtggctcacaaccatctgtaataggatccaatgccctcttc 65
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 569 aattcccagcaaccacatggtggctcacaaccatctgtaataggatccaatgccctcgtc 510

                                                                       
Query: 66  tgtgtctgaagacagctacagtgcactcatatacattaaataaataaatcaatacataaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 509 tgtgtctgaagacagctacagtgcactcatatacattaaataaataaataaatacataaa 450

                                                                       
Query: 126 tcttttttaaattttatttttagttatgtgcatgtctattctgtatatctatgcagagtc 185
           ||||||||||| | ||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct: 449 tcttttttaaaatgtatttttagttatgtgcatgtctattctgcatatctgtgcagaatc 390

                                                                       
Query: 186 tgtgcagtgtctgagtaagcccaaagaggacctgaaattacaggactgtgagtggcctga 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtgcagtgtctgagtaagcccaaagaggacctgaaattacaggactgtgagtggcctga 330

                                                                       
Query: 246 cctgggtgttggcagctgtccacagaggtcaaaagaaggcatagggcctgctgggattgg 305
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cctgggtgttggcaactgtccacagaggtcaaaagaaggcatagggcctgctgggattgg 270

                                                                       
Query: 306 aatttcagatggctcagaaccaccatgtgggggctgggaatcaaacccgggcgctcttaa 365
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aattttagatggctcagaaccaccatgtgggggctgggaatcaaacccgggcgctcttaa 210

                                                                       
Query: 366 gtgcagagccctttccagcttgctgtctgtctgcctacctgcctgcctgcctgcctgcct 425
           |||||||||||||||||||||||||||||||||  |  ||||||||||||||||||||||
Sbjct: 209 gtgcagagccctttccagcttgctgtctgtctg--t--ctgcctgcctgcctgcctgcct 154

                                                                       
Query: 426 gtctgtctgtctgtctgagacagggtctcagacagtcatcgttggactggcttcaactat 485
           | |   || |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 153 g-c---ctatctgtctgagacagggtctcagacagtcatggttggactggcttcaactat 98

                                                                       
Query: 486 gtagactaggctggcctgatgtgtgtaaactagtttggcctttagactcagcagagattg 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97  gtagactaggctggcctgatgtgtgtaaactagtttggcctttagactcagcagagattg 38

                                                
Query: 546 acctgcctctgccactagagtgctagaattaaacatg 582
           |||||||||||||||||||||||||||||||||||||
Sbjct: 37  acctgcctctgccactagagtgctagaattaaacatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space:   725625
Effective search space used:   725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |