BAC Information

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BAC

Clone NameMSMg01-497F06
Chromosome11 (Build37)
Map Location 61,045,007 - 61,045,613
singlet/doubletsinglet
Overlap genenone
Upstream geneTom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1
Downstream geneAldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2, Grap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497F06.T7 (MSMg01no497_f06.b1)MSMg01-497F06.TJ (MSMg01no497_f06.g1)
ACCAG573923AG573924
length749745
length of high quality
(start - end)
541 (71 - 611)608 (79 - 686)
definitionCHROMAT_FILE: MSMg01no497_f06.b1 PHD_FILE: MSMg01no497_f06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:58 2005CHROMAT_FILE: MSMg01no497_f06.g1 PHD_FILE: MSMg01no497_f06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:22:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCCTTTGACGAACAGACTGGGAGGAAGAAGCAGCTCATTATGA
GAAAAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGC
CAAAAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGG
CTTCAAGGTCCGCCCTATGCGGAGTCCCCGCCCTGCGTAGTGCGTCAGCC
CTGCGCAGAGAGACAATGCGCAGAGAGGCAATGCGCAGACTCATTCATTC
CCAGAGAGGAACAAAGGAAAATACAACAGGCATTTCCAGTCTTTGAAGGA
GCCGAGGGTGGGCGTGTCCACGCTCCGGTAGAATACGTACAGATTAAAGA
ACTTGCCGAGTCGGTCCGTAAATACGGAACCAATGCTAATTTTACCTTGG
TGCAGTTAGACAGGCTCGCCGGCATGGCACTAACTCCTGCCGACTGGCAA
ACGGTTGTAAAAGCCGCTCTCCCTAGTATGGGCAAATATATGGAATGGAG
AGCTCTTTGGCATGAAGCTGCACAAGCGCAGGCCCGAGCAAACGCAGCTG
CTTTGACTCCAGAGCAGAGAGATTGGACTTTTGACTTGTTAACGGGTCAG
GGAGCTTATTCTGCTGATCAGACNAACTACCATTGGGGAGCTTATGCCCA
GATTTCTTCCACGGCTATTAGGGCCTGGAAGGCGCTCTCCCGAGCAGGG
NTTTCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGGAGTGCCACGAAGTCCTC
ATAAGACAGGAAGTACTAGGTACACATCCACACAAGAGTCCCAACCGCCT
TCTAGAAAAAGGAGCTCAGAGGTTGACCAGCCTGAAGCTGGGCAGGAGAG
CAGGTCCTCCTGCCCCTCCTTTGAAAAGGAACTTCACCAGAACCTGCACG
TTTCTGACCAGGATATTAAAAACTCAAGCTTGGTGGCTTCCAGATGCAGG
AGCCAGAAGGCAGAGTCCAAGAGACAACCTTGTGGTTAGGGAAGTTGAAA
TCTAGAGTGATGTGTAGTTTGTAAAACAACACAACACAAAACAAATCAGC
ATCCCCCAATGAGACCTCTTATCTTATATAATTAAAAAGTAATCAAATGA
TGTGTACGTGGTCTATGAACAAGGCAGCCTAGCAAGAGGACGTTTCCGTA
AGCTACTGGCTGTGGGCTCGGATGCCGGCGTCCTTCTGGAGCTGGTGCAC
ACCTCATTTCCTCAAAATCGGCTAATAAGCGGGACCTTTTTATGATCACT
TTCCCCATAAAAATTGTCCTCTGTCTGCCCCCTGCTGTTTATAGAGGGAG
CAGCATGCTGCTGTTGCATGGTGCTTTTTTCCCCACCCACTTTAGGTCAC
CCAGCCAGATGCCTGCTCGGCCAGATGCACATGGAAGGCTCAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_f06.g1 MSMg01no497_f06.g1 CHROMAT_FILE:
MSMg01no497_f06.g1 PHD_FILE: MSMg01no497_f06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:22:59 2005
         (608 letters)



>mm_chr11_61044807_61045813
          Length = 1007

 Score = 1062 bits (549), Expect = 0.0
 Identities = 594/609 (97%), Gaps = 3/609 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggggagtgccacgaagtcctcataagacaggaagtactaggtacacatccacacaagag 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 aggggagtgtcacgaagtcctcataagacaggaagtactaggtacacatccacacaagag 748

                                                                       
Query: 61  tcccaaccgccttctagaaaaaggagctcagaggttgaccagcctgaagctgggcaggag 120
           |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tcccaaccaccttctagataaaggagctcagaggttgaccagcctgaagctgggcaggag 688

                                                                       
Query: 121 agcaggtcctcctgcccctcctttgaaaaggaacttcaccagaacctgcacgtttctgac 180
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| 
Sbjct: 687 agcaggtcctcctgcccctcctttgaaaaggaacttcaccagaacccgcacgtttctgaa 628

                                                                       
Query: 181 caggatattaaaaactcaagcttggtggcttccagatgcaggagccagaaggcagagtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 627 caggatattaaaaactcaagcttggtggcttccagatgcaggagccagaaggcagagccc 568

                                                                       
Query: 241 aagagacaaccttgtggttagggaagttgaaatctagagtgatgtgtagtttgtaaaaca 300
           |||||||| | |||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 567 aagagacagctttgtggttaggg-agttgaaatctagagtgatgtttagtttgtaaaaca 509

                                                                       
Query: 301 acacaacacaaaacaaatcagcatcccccaatgagacctcttatcttatataattaaaaa 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acacaacacaaaacaaatcaacatcccccaatgagacctcttatcttatataattaaaaa 449

                                                                       
Query: 361 gtaatcaaatgatgtgtacgtggtctatgaacaaggcagcctagcaagaggacgtttccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtaatcaaatgatgtgtacgtggtctatgaacaaggcagcctagcaagaggacgtttccg 389

                                                                       
Query: 421 taagctactggctgtgggctcggatgccggcgtccttctggagctggtgcacacctcatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 388 taagctactggctgtgggctcggatgccggcgtccttctggagctggtgcatacctcatt 329

                                                                       
Query: 481 tcctcaaaatcggctaataagcgggacctttttatgatcactttccccataaaaattgtc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcctcaaaatcggctaataagcgggacctttttatgatcactttccccataaaaattgtc 269

                                                                       
Query: 541 ctctgtctgccccctgctgtttatagagggagcagcatgctgctgttgcatggtgc-ttt 599
           ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 268 ctctgtctg-cccctgctggttatagagggagcagcatgctgctgttgcatggtgctttt 210

                    
Query: 600 tttccccac 608
           |||||||||
Sbjct: 209 tttccccac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1007
Length adjustment: 10
Effective length of query: 598
Effective length of database: 997
Effective search space:   596206
Effective search space used:   596206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)