Query= MSMg01no497_j09.b1 MSMg01no497_j09.b1 CHROMAT_FILE:
MSMg01no497_j09.b1 PHD_FILE: MSMg01no497_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:20 2005
(622 letters)
>mm_chr11_33788238_33789259
Length = 1022
Score = 1122 bits (580), Expect = 0.0
Identities = 611/624 (97%), Gaps = 7/624 (1%)
Strand = Plus / Minus
Query: 6 gaattctgttttcattttggttttg-----g-ttttttgtttttgttgttgtttgtttct 59
|||||||||||| |||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 986 gaattctgttttgattttggttttgtttttgtttttttgtttttgttgttgtttgtttct 927
Query: 60 tttctgtctttgtttgcttgcttgctttcttgcttgc-ttttttaaaaaataaattatcc 118
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 926 tttctgtctttgtttgcttgcttgctttcttgcttgctttttttaaaaaataaattatcc 867
Query: 119 agactcaggtattctgtgagtgcagcagaaaacaaactaagccaccatgctttcagtcct 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 agactcaggtattctgtgagtgcagcagaaaacaaactaagccaccatgctttcagtcct 807
Query: 179 ttcctgactactctttctgcccagtacttgtgcctgcctttgtcagcctgggctgtgtac 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 ttcctgactactctttctgcccagtacttgtgcctgcctttgtcagcctgggctgtgtac 747
Query: 239 atccttcaactacacatatctgagacctgtatgaaccacaaagattaaagtatttagaga 298
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 746 atccttcaactacacatatctgagacctggatgaaccacaaagattaaagtatttagaga 687
Query: 299 agaactgagcacctaaggatctcaggcatgcccagagaaagatagcatgttccaacccca 358
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 686 agaactgagcacctaaggatctcaggcatgccccgagaaagatagcatgttctaacccca 627
Query: 359 gctcccacaatggttaactgttcaacccctttgtgctacagttttacagtatctgtaaat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gctcccacaatggttaactgttcaacccctttgtgctacagttttacagtatctgtaaat 567
Query: 419 tagaagcaaaactatgctgattctattgtaataatccactaaaggctgagtgctgggcac 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 tagaagcaaaactatgctgattctattgtaataatccactaaaggctgagtgctgggcac 507
Query: 479 atgtcaagtaccatgtgagcagccgccaatgctggaagcagcagtgtgccaggagctctg 538
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 506 atgtcaagtaccatgtgagcagtcgccaatgctggaagcagcagtgtgccaggagctctg 447
Query: 539 gatgagactgctctcttccacacaccttgttctctagagcccagaactagaagcagctgg 598
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gatgagactgctctcttccatacaccttgttctctagagcccagaactagaagcagctgg 387
Query: 599 gtgtcttgggatctctgttcacag 622
||||||||||||||||||||||||
Sbjct: 386 gtgtcttgggatctctgttcacag 363
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no497_j09.g1 MSMg01no497_j09.g1 CHROMAT_FILE:
MSMg01no497_j09.g1 PHD_FILE: MSMg01no497_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:20 2005
(606 letters)
>mm_chr11_33597361_33598366
Length = 1006
Score = 1129 bits (584), Expect = 0.0
Identities = 600/606 (99%), Gaps = 2/606 (0%)
Strand = Plus / Plus
Query: 1 aggatgtgcacaggcatagtcaacactcactcctgtgtagcttggtagtgataatgcttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggatgtgcacaggcatagtcaacactcactcctgtgtagcttggtagtgataatgcttc 260
Query: 61 tgtctctcctctgctcagggagctctgtggtaacagaagatgaagcatggtgagatactg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtctctcctctgctcagggagctctgtggtaacagaagatgaagcatggtgagatactg 320
Query: 121 tggtcctttcatttgtgttggatggaagatgcccctgtcagctgaggatcctcagcaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtcctttcatttgtgttggatggaagatgcccctgtcagctgaggatcctcagcaaag 380
Query: 181 gggttagaagggagcagagagaagacacgcctacaaaggccttgccattaagcatagagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggttagaagggagcagagagaagacacgcctacaaaggccttgccattaagcatagagg 440
Query: 241 atgatttagtgaacggtagtccaattctaacattgatgtggagggccataccttcccatg 300
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgatggagtgaacggtagtccaattctaacattgatgtggagggccataccttcccatg 500
Query: 301 ggattctgccttgttaaagtcagggcactggtaaattctctgaggaacaaatcacaaata 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ggattctgccttgttaaagtcagggcattggtaaattctctgaggaacaaatcacaaata 560
Query: 361 tctctgcactggttgatcttatcccaagtattctaaaattccacagagtggaaagacagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctgcactggttgatcttatcccaagtattctaaaattccacagagtggaaagacagg 620
Query: 421 aaagaattcaagtttaattgtgtgtgtgtgtgtgtttctgtgtatatgtatatgcatgtg 480
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 aaagaattcaagtataattgtgtgtgtgtgtgt--ttctgtgtatatgtatatgcatgtg 678
Query: 481 tatgtgtctgtgtctatgcatatgtatgtgtgactcttccagcacactgtgtcagtggcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tatgtgtctgtgtctatgcatatgtatgtgtgactcttccagcacactgtgtcagtggcc 738
Query: 541 tgaaatctgacccatgatctacaatatgactatgtttgctaagtgctggctattgtcatt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 tgaaatctgacccatgatctacaatatgactatgtttgctaagtgctggctattgtcatt 798
Query: 601 tgatgg 606
||||||
Sbjct: 799 tgatgg 804
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
