BAC Information

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BAC

Clone NameMSMg01-497M02
Chromosome11 (Build37)
Map Location 115,225,064 - 115,394,844
singlet/doubletdoublet
Overlap geneC630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2
Upstream gene4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3
Downstream geneNup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-497M02.T7 (MSMg01no497_m02.b1)MSMg01-497M02.TJ (MSMg01no497_m02.g1)
ACCAG574245AG574246
length753752
length of high quality
(start - end)
692 (47 - 738)381 (325 - 705)
definitionCHROMAT_FILE: MSMg01no497_m02.b1 PHD_FILE: MSMg01no497_m02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:33 2005CHROMAT_FILE: MSMg01no497_m02.g1 PHD_FILE: MSMg01no497_m02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:23:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,394,213 - 115,394,844)(115,225,064 - 115,225,444)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTTTGTGTTCCAAGAAGGCCTCATTTGTGGTTAGATTGGCCTG
GAAGTCTGTTAGGAGTATAGGCATGTGCCGCCATATTTTCTGTTTTATGC
CCCCTTTATAGTACAATAAAAAACTGCCTCCAGACTTGTTTAAGTTCCTG
TGTTAGCATTTTATTTATGTCTGGCCTGAAACTCACAGAGATCTACTTGT
CTCTGCCTCCCAAGTGCTGGGGTCAAAGATGTGTGCCACCACATTGCACG
TTTTATATTCTATAACTTTTTGAAACAATCTCCCTAAAGAATTAGTCAAC
AAAGAAATTTGGGAAAGGGTCCTTTTGAGGTGGCTCTGTGAGCCTGATTG
TACCCAGTCCTGAAGCCCACAGTAGGAGAGAGCCTCTGACTTAAGAGTTG
AAGTTGTCCTGGGAGCTGCCTCCATTCCTGTACAAGACTAGAATCTCACA
TGCCAGGCAAGCAGTCTACTAATGACCTGTTTGCCAGCACTGGACATGCT
TCCACACACAAACACTTAGTCAAGTTTAGGGATCAGCTGGGGAATAGCCA
TAGTGTAGTGATGGAGCATTTGCCCACCATGAGGAGGCCCAGGGTTCTGT
TCCTGGGTAGAGGTGGTTACCAAAGGGGTTTACTGTGTGGCATCTTCCAT
TGAACATTCATTACCCACAGGTTTGCCTCTGCCTCCCAAGTGCTGGGATG
AAN
ACCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCATACAAGGGGNG
ACCTATAGAAGGTTCTCAAAAAGCGCCGCTGGGATGGATAGTTTGATGTC
AATTTGATGCAGGCTGGGGTCATTTGCGAAGAGGGAACCTCAATTAAGAA
AAACCTCCAGCTGGGCGGTGGTGGCACACGCCTTTAATCCCGGCTCTTGG
GAGGCAGAGGCAGGTGGAGCTCCGAGTTTGAGGCTAGCCTGCGCTACATA
GTCACTTCCAAGATAGCCAGGGCTACACAGAGAAACCCTGTCTCAATCAA
TGAATCAATCAATCAATTTTTGTGCCTCCATAAGATCCAGCTGTGAGGCA
TTTTCTTAATTAGTAATTGATGGGGAGGGCCCAGCCTATTGTGGATGGAG
CCATCCCTGAGCTGGCGGCCCTGAGTTCTATAAGAAAGCAGGCTGAGCAA
GCCATGGGGAGCAGGTCAGTAAGCAGCCCCCTCCATGGCCTCTACACCAG
CTGCTGCCTCCAGGTTCCTGCCCTGTTGGAGTTCCTGCCCTGACCCCAAG
TTGCTTTGATCAGGGTGTACCATTACACCACACAGGCATGCTCTCCTTTG
GGAACCTCCAGCCCCAACTTCTACACCCCACATTCCTGACTCAGGTCTAG
ATCCACTCACCTCACAGCCCAGCAGCCCAGCATTGGCCCTGCTCTCAAAG
CTGAGGCAGATGAAGCTGAGGTCCTGACAAGGCTGAGTGCCACGGGGCTG
CN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no497_m02.b1 MSMg01no497_m02.b1 CHROMAT_FILE:
MSMg01no497_m02.b1 PHD_FILE: MSMg01no497_m02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:33 2005
         (692 letters)



>mm_chr11_115393753_115394844
          Length = 1092

 Score = 1168 bits (604), Expect = 0.0
 Identities = 625/632 (98%)
 Strand = Plus / Minus

                                                                        
Query: 61   tgttaggagtataggcatgtgccgccatattttctgttttatgccccctttatagtacaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 tgttaggagtataggcatgtgccgccatattttctgttttatgccccctttatagtacaa 1033

                                                                        
Query: 121  taaaaaactgcctccagacttgtttaagttcctgtgttagcattttatttatgtctggcc 180
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 taaagaactgcctccagacttgtttaagttcctgtgttagcattttatttatgtctggcc 973

                                                                        
Query: 181  tgaaactcacagagatctacttgtctctgcctcccaagtgctggggtcaaagatgtgtgc 240
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 972  tgaaactcacagagatctacttgtctctgcctcccaagtgctgggatcaaagatgtgtgc 913

                                                                        
Query: 241  caccacattgcacgttttatattctataactttttgaaacaatctccctaaagaattagt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  caccacattgcacgttttatattctataactttttgaaacaatctccctaaagaattagt 853

                                                                        
Query: 301  caacaaagaaatttgggaaagggtccttttgaggtggctctgtgagcctgattgtaccca 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852  caacaaagaaatttgggaaagggtccttttgaggtggctctgtgagcctgattgtaccca 793

                                                                        
Query: 361  gtcctgaagcccacagtaggagagagcctctgacttaagagttgaagttgtcctgggagc 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  gtcctgaagcccacagtaggagagagcctctgacttaagagttgaagttgtcctgggagc 733

                                                                        
Query: 421  tgcctccattcctgtacaagactagaatctcacatgccaggcaagcagtctactaatgac 480
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732  tgcctccactcctgtacaagactagaatctcacatgccaggcaagcagtctactaatgac 673

                                                                        
Query: 481  ctgtttgccagcactggacatgcttccacacacaaacacttagtcaagtttagggatcag 540
            ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672  ctgtttgccagcactcgacatgcttccacacacaaacacttagtcaagtttagggatcag 613

                                                                        
Query: 541  ctggggaatagccatagtgtagtgatggagcatttgcccaccatgaggaggcccagggtt 600
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612  ctagggaatagccatagtgtagtgatggagcatttgcccaccatgaggaggcccagggtt 553

                                                                        
Query: 601  ctgttcctgggtagaggtggttaccaaaggggtttactgtgtggcatcttccattgaaca 660
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552  ctgttcccgggtagaggtggttaccaaaggggtttactgtgtggcatcttccattgaaca 493

                                            
Query: 661  ttcattacccacaggtttgcctctgcctccca 692
            ||||| ||||||||||||||||||||||||||
Sbjct: 492  ttcatcacccacaggtttgcctctgcctccca 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no497_m02.g1 MSMg01no497_m02.g1 CHROMAT_FILE:
MSMg01no497_m02.g1 PHD_FILE: MSMg01no497_m02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:23:33 2005
         (381 letters)



>mm_chr11_115224864_115225644
          Length = 781

 Score =  690 bits (357), Expect = 0.0
 Identities = 375/381 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctccataagatccagctgtgaggcattttcttaattagtaattgatggggagggcccag 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 cctccataagatccagctgtgaggcattttcttaattagtaattgacggggagggcccag 260

                                                                       
Query: 61  cctattgtggatggagccatccctgagctggcggccctgagttctataagaaagcaggct 120
           |||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct: 261 cctagtgtggatggagtcatccctgagctggtggtcctgagttctataagaaagcaggct 320

                                                                       
Query: 121 gagcaagccatggggagcaggtcagtaagcagccccctccatggcctctacaccagctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcaagccatggggagcaggtcagtaagcagccccctccatggcctctacaccagctgc 380

                                                                       
Query: 181 tgcctccaggttcctgccctgttggagttcctgccctgaccccaagttgctttgatcagg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tgcctccaggttcctgccctgttggagttcctgccctgaccccaagttgctttggtcagg 440

                                                                       
Query: 241 gtgtaccattacaccacacaggcatgctctcctttgggaacctccagccccaacttctac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtaccattacaccacacaggcatgctctcctttgggaacctccagccccaacttctac 500

                                                                       
Query: 301 accccacattcctgactcaggtctagatccactcacctcacagcccagcagcccagcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 accccacattcctgactcaggtctagatccactcacctcacagcccagcagcccagcatt 560

                                
Query: 361 ggccctgctctcaaagctgag 381
           |||||||||||||||||||||
Sbjct: 561 ggccctgctctcaaagctgag 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)