Query= MSMg01no498_o12.b1 MSMg01no498_o12.b1 CHROMAT_FILE:
MSMg01no498_o12.b1 PHD_FILE: MSMg01no498_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:08 2005
(641 letters)
>mm_chr11_42793837_42794876
Length = 1040
Score = 1027 bits (531), Expect = 0.0
Identities = 606/639 (94%), Gaps = 18/639 (2%)
Strand = Plus / Minus
Query: 5 gaattctttctg-tttcctcataaggttagataatcacttagtttcagtgacacagaaca 63
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 gaattctttctgattt-ctcataaggttagataatcacttagtttcagtgacacagaaca 960
Query: 64 ttatcatgcgtgactctattttaacctttagtcttgtgctgaggtctagtgtagaaggtc 123
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 959 ttatcatgcgtgactctattttaacctttagtcttgtgttgaagtctagtgtagaaggtc 900
Query: 124 aaggcaataagaggcccttctgtaagtacttcacccttgataaacatctatttctgcctc 183
||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 899 aaggcaatatgaagcccttctgtaagtacttcacctttgataaacatctatttctgcct- 841
Query: 184 tgtatgaaggtactgtaccaatcacaggtgtgggcttatcgtggacgttggtctgcagac 243
|||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 840 ------------ctgtaccaatcacaggtgtgggcttatcgtggaccttggtctgcagac 793
Query: 244 acttactaccataaccatatgagaagtcacaccttatttaacagttaagggaaatacatt 303
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct: 792 acttactaccataaccatatgagaagtcacacctcaattaacagttaagggaaatgcatt 733
Query: 304 attattgagaagttaatgaatagccaacaggattttcccatggccaagaactgtctctaa 363
||||||||||||||| |||| | | ||||||||||| |||||||||||||||||||||||
Sbjct: 732 attattgagaagttagtgaa-atctaacaggatttttccatggccaagaactgtctctaa 674
Query: 364 attatcctcattttgggaactgttctaggaactatcttaggctctgcccactggtgacag 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 attatcctcattttgggaactgttctaggaactatcttaggctctgcccactggtgacag 614
Query: 424 tgtttcatctggccagcaaataaggctccgcttcagcttaggaagacctttctataggga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgtttcatctggccagcaaataaggctccgcttcagcttaggaagacctttctataggga 554
Query: 484 caatgggatattcgatgtaaccaactgcatacaaacaggaagaatacaaaaggcgaggag 543
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 553 caatgggatattccatgtaaccacctgcatacaaacaggaagaatacaaaaggcgaggag 494
Query: 544 agcagacagtaagctcaaagtattccattcctct-ctcataattggttttgctagattat 602
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 493 agcagacagtaagctcaaagtattccattcctctcct-ataattggttttgctagattat 435
Query: 603 aaatatttccaggattttatttttaaaattatgtacatg 641
|||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaatatttccaggattttatttttaaaattatgtacatg 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space: 649930
Effective search space used: 649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no498_o12.g1 MSMg01no498_o12.g1 CHROMAT_FILE:
MSMg01no498_o12.g1 PHD_FILE: MSMg01no498_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:08 2005
(678 letters)
>mm_chr11_42698300_42699379
Length = 1080
Score = 1257 bits (650), Expect = 0.0
Identities = 672/680 (98%), Gaps = 2/680 (0%)
Strand = Plus / Plus
Query: 1 aaagctgacatttgtaaaacatgatctcttttccctgttgaaagagtcctttcctgacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagctgacatttgtaaaacatgatctcttttccctgttgaaagagtcctttcctgacac 260
Query: 61 aacaaagcaaattcttttgcttaaaaagacagtagaaggaatgattaggaggggtacatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaagcaaattcttttgcttaaaaagacagtagaaggaatgattaggaggggtacatt 320
Query: 121 tatcctgccaagcagccaacatcagtcttccataggcatttaaactcctttgactctatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatcctgccaagcagccaacatcagtcttccataggcatttaaactcctttgactctatt 380
Query: 181 tcttgtggataaaaaaaaaactactacataaattgcttgcct--aaaaagaaataatatg 238
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 381 tcttgtggataaaaaaaaaactactacataaattgcttgcctaaaaaaaaaaataatatg 440
Query: 239 atttctctcccatagttaatcttgtgggactcagttagttcatctacatcataaaggaat 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttctctcccaaagttaatcttgtgggactcagttagttcatctacatcataaaggaat 500
Query: 299 caaaaatgatgttcaaatgttggcaaatttaccattttcttccttcttagttctcaacta 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaaaatgatgttcaaatgttggcaaatttaccattttcttccttcttagttctcaacta 560
Query: 359 cttaaattagaaatgatacctaatgcagcataaatccccaaattactttcctctttttct 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 cttaaattagaaatgatacctaatgcagcataaatccccaaattactttcctcttttgat 620
Query: 419 cctatcaaccaataaaatatcaaaatatttttgttctgttgtatatttttaatcttaata 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cctatcaaccaataaaatatcaaaatatttttgttctgttgtatatttttaatcttaata 680
Query: 479 gcattaagattatatatttgttatgaaatttcagagagattaggcagaaaaataaaacta 538
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 681 gcattaagattatatatttgttatgaaatttcagagagattaggcagaaaaataaagcta 740
Query: 539 aacttgtttcaggttgttgtgttccccagctctctggatcttcagtttcaaagttcacca 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aacttgtttcaggttgttgtgttccccagctctctggatcttcagtttcaaagttcacca 800
Query: 599 caactggacagagagcagacaactattctagttgaatgggatggctccatatgaagtagg 658
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 801 caactggacagagagcagacaactattctagttgaatgggctggctccatatgaagtagg 860
Query: 659 gtaaagaaaaagtttcatgg 678
||||||||||||||||||||
Sbjct: 861 gtaaagaaaaagtttcatgg 880
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1080
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1070
Effective search space: 714760
Effective search space used: 714760
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
