Query= MSMg01no499_a07.b1 MSMg01no499_a07.b1 CHROMAT_FILE:
MSMg01no499_a07.b1 PHD_FILE: MSMg01no499_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:18 2005
(662 letters)
>mm_chr11_38359490_38360549
Length = 1060
Score = 1218 bits (630), Expect = 0.0
Identities = 645/650 (99%), Gaps = 2/650 (0%)
Strand = Plus / Plus
Query: 13 ggaattcattagttttattgtcttatagaccaaatattataggcaagaaagggagaaaat 72
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ggaattcattagttttag-gtcttatagaccaaatattataggcaagaaagggagaaaat 271
Query: 73 ttaagtctgttaggcagaaaaaaaaaaaacacttcccaaaagatgcccacattctaatat 132
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 272 ttaagtctgttaggcagaaaaaaaaaaa-cacttcccaaaagatgcccacattctaatat 330
Query: 133 tcaggatctgtggacatgctaaaattattatatatgattgcatatacaggtatatctgct 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tcaggatctgtggacatgctaaaattattatatatgattgcatatacaggtatatctgct 390
Query: 193 agccaatgagaaactaaatctatagtagcttacctagtgggccctgtatgatcatgggag 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 agccaatgagaaactaaatctatagtagcttacctagtgggccctgtatgatcatgggag 450
Query: 253 agaaggagggagacagcaaagagttagcaagagagtaaaaattatagttaaaataaattg 312
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 451 agaaggagggagacagcaaagagttagcaagagagtaaaaattagagttaaaataaattg 510
Query: 313 agaagttagcatctggtagaattgaaagatggaatgagcaatgtgtcaaggaaactagac 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agaagttagcatctggtagaattgaaagatggaatgagcaatgtgtcaaggaaactagac 570
Query: 373 aaccaatcgaaactcagcataaaagaaaaatagatctcttcaccttcttgggaatctagc 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 aaccaatcgaaactcagcataaaagaaaaatagatctcttcaccttcttgggaatctagc 630
Query: 433 acgagtgctatcatgatctaggtcagaaatacctgcttctggattctgactaacagactg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 acgagtgctatcatgatctaggtcagaaatacctgcttctggattctgactaacagactg 690
Query: 493 caaatgaagacagacactcctgggagatattgtgggctcagatggctatagtaaaggaat 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 caaatgaagacagacactcctgggagatattgtgggctcagatggctatagtaaaggaat 750
Query: 553 gtcacaatacaaattcatgtgtgtttttatttctcatttcatgtaaaattatgctcatgc 612
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gtcacaatacaaagtcatgtgtgtttttatttctcatttcatgtaaaattatgctcatgc 810
Query: 613 tgagttctagtcagctaaaatgtataataccattacatcttaaaatatca 662
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tgagttctagtcagctaaaatgtataataccattacatcttaaaatatca 860
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1060
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1050
Effective search space: 684600
Effective search space used: 684600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no499_a07.g1 MSMg01no499_a07.g1 CHROMAT_FILE:
MSMg01no499_a07.g1 PHD_FILE: MSMg01no499_a07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:25:18 2005
(653 letters)
>mm_chr11_38492951_38494003
Length = 1053
Score = 1232 bits (637), Expect = 0.0
Identities = 649/653 (99%)
Strand = Plus / Minus
Query: 1 tccattctggaagtacatatcctggagatgctatcttacctctgtaggatacatgtgact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 853 tccattctggaagtacatatcctggagatgctatcttacctctgtaggatacatgtgact 794
Query: 61 ctctttctcctaaacagttacatttgttctcctgtgtgcaaaatcctagaggaagaaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 ctctttctcctaaacagttacatttgttctcctgtgtgcaaaatcctagaggaagaaaag 734
Query: 121 tgtaaaatatataaaccaaattcctcaatatttaagacaaataataatgtcaaaataatt 180
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 733 tgtaaaatatataaaccaaattcctcaatatgtaagacagataataatgtcaaaataatt 674
Query: 181 ggatcttataatcaccataagataatgcattcatttttaaaagaaagcagatttgtcttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ggatcttataatcaccataagataatgcattcatttttaaaagaaagcagatttgtcttg 614
Query: 241 tgaaaatattagtgctttgctttcatgcctgatcctttccaccgcccacccctgccgcga 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tgaaaatattagtgctttcctttcatgcctgatcctttccaccgcccacccctgccgcga 554
Query: 301 tcctgcttctcatgtgcttaacctgcactttaccacaccatgacaaccagtcagtgaaac 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tcctgcttctcctgtgcttaacctgcactttaccacaccatgacaaccagtcagtgaaac 494
Query: 361 acggtctcatctgggttttcttgtcaaccttttcaaggaagtactgggagtgtagtagat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 acggtctcatctgggttttcttgtcaaccttttcaaggaagtactgggagtgtagtagat 434
Query: 421 gtactttgcacaaagccttgtataccaggccagttttgaaatgtcagacattgaagaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gtactttgcacaaagccttgtataccaggccagttttgaaatgtcagacattgaagaatt 374
Query: 481 ctgtgctgccacattcaggaggcaagtggacactggtgaacactcagatgtgtctctctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ctgtgctgccacattcaggaggcaagtggacactggtgaacactcagatgtgtctctctc 314
Query: 541 agatcaaatgcagaaaacacactgttcctataacacactgttatcaagttcatgaacttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 agatcaaatgcagaaaacacactgttcctataacacactgttatcaagttcatgaacttg 254
Query: 601 acagcgcagggcaacagttccctattgtaggaagaaatgaaagcctactgcat 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 acagcgcagggcaacagttccctattgtaggaagaaatgaaagcctactgcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
